SMTL ID : 5a5q.1

Crystal structure of human ATAD2 bromodomain in complex with 3-methyl- 8-piperidin-4-ylamino-1,2-dihydro-1,7-naphthyridin-2-one hydrochloride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.113 Water bridges: A:E.114 EDO.2: 6 residues within 4Å: Chain A: E.10, F.14, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116

1 x 6XC: 3-METHYL-8-[(PIPERIDIN-4-YL)AMINO]-1,2-DIHYDRO-1,7-NAPHTHYRIDIN-2-ONE(Non-covalent)

6XC.3: 9 residues within 4Å: Chain A: V.30, V.35, E.39, Y.43, Y.85, N.86, D.90, D.93, I.96 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35, A:I.96 Hydrogen bonds: A:N.86, A:N.86, A:D.90 Water bridges: A:E.39

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: L.95, R.99 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.99, A:R.99 Salt bridges: A:R.99 SO4.5: 3 residues within 4Å: Chain A: R.9, R.12, R.16 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.12, A:R.16, A:R.16, A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demont, E.H. et al., Fragment-Based Discovery of Low-Micromolar Atad2 Bromodomain Inhibitors. J.Med.Chem. (2015)

Release Date

2015-07-22

Peptides

ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2

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