SMTL ID : 5eya.1

TRIM25 RING domain in complex with Ubc13-Ub conjugate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain B: C.31, H.33, C.53, Q.55, C.56, A.58 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.31, B:H.33, B:C.53, B:C.56 ZN.2: 6 residues within 4Å: Chain B: C.16, I.18, C.19, K.24, C.36, C.39 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.16, B:C.19, B:C.36, B:C.39 ZN.3: 7 residues within 4Å: Chain C: T.29, C.31, H.33, C.53, Q.55, C.56, A.58 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.31, C:H.33, C:C.53, C:C.56 ZN.4: 6 residues within 4Å: Chain C: C.16, I.18, C.19, K.24, C.36, C.39 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.16, C:C.19, C:C.36, C:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanchez, J.G. et al., Mechanism of TRIM25 Catalytic Activation in the Antiviral RIG-I Pathway. Cell Rep (2016)

Release Date

2016-08-17

Peptides

Ubiquitin-conjugating enzyme E2 N: AD
Tripartite motif-containing 25 variant: BC
Polyubiquitin-B: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
F

C
G

E
C

F
D

Ubiquitin-conjugating enzyme E2 N

Tripartite motif-containing 25 variant

Polyubiquitin-B

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