SMTL ID : 5fer.1

Complex of TRIM25 RING with UbcH5-Ub

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.16, C.19, K.24, C.36, C.39 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.16, A:C.19, A:C.36, A:C.39 ZN.2: 5 residues within 4Å: Chain A: T.29, C.31, H.33, C.53, C.56 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.31, A:H.33, A:C.53, A:C.56 ZN.3: 4 residues within 4Å: Chain D: C.31, H.33, C.53, C.56 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.31, D:H.33, D:C.53, D:C.56 ZN.4: 4 residues within 4Å: Chain D: C.16, C.19, C.36, C.39 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.16, D:C.19, D:C.36, D:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koliopoulos, M.G. et al., Functional role of TRIM E3 ligase oligomerization and regulation of catalytic activity. Embo J. (2016)

Release Date

2016-05-18

Peptides

E3 ubiquitin/ISG15 ligase TRIM25: AD
Ubiquitin-conjugating enzyme E2 D1: BE
Ubiquitin-40S ribosomal protein S27a: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

E3 ubiquitin/ISG15 ligase TRIM25

Ubiquitin-conjugating enzyme E2 D1

Ubiquitin-40S ribosomal protein S27a

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