SMTL ID : 5mj5.1

Crystal structure of the Retinoid X Receptor alpha in complex with synthetichonokiol derivative 3 and a fragment of the TIF2 co-activator.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 7O0: (~{E})-3-[4-oxidanyl-3-[3-(phenylmethyl)phenyl]phenyl]prop-2-enoic acid(Non-covalent)

7O0.1: 22 residues within 4Å: Chain A: I.40, A.43, A.44, Q.47, W.77, N.78, L.81, F.85, R.88, I.96, L.98, A.99, V.104, A.109, V.114, I.117, F.118, V.121, C.204, H.207, L.208, F.211 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.40, A:I.40, A:I.40, A:A.44, A:L.81, A:F.85, A:F.85, A:I.96, A:L.98, A:V.104, A:A.109, A:V.114, A:F.118, A:H.207, A:L.208 Hydrogen bonds: A:N.78, A:A.99 Water bridges: A:F.85 Salt bridges: A:R.88 7O0.2: 22 residues within 4Å: Chain C: I.40, A.43, A.44, Q.47, W.77, N.78, L.81, F.85, R.88, I.96, L.98, A.99, V.104, A.109, V.114, I.117, F.118, V.121, C.204, H.207, L.208, F.211 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:I.40, C:I.40, C:I.40, C:A.44, C:L.81, C:F.85, C:F.85, C:I.96, C:L.98, C:V.104, C:A.109, C:V.114, C:F.118, C:H.207, C:L.208 Hydrogen bonds: C:N.78, C:A.99 Water bridges: C:F.85 Salt bridges: C:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheepstra, M. et al., Ligand Dependent Switch from RXR Homo- to RXR-NURR1 Heterodimerization. ACS Chem Neurosci (2017)

Release Date

2017-11-08

Peptides

Retinoic acid receptor RXR-alpha: AC
LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER

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