SMTL ID : 4rme.1

Crystal structure of human Retinoid X receptor alpha ligand binding domain complex with 9cUAB111 and coactivator peptide GRIP-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 3T2: (2E,4E,6Z,8E)-3,7-dimethyl-8-[2-(3-methylbutyl)-3-(propan-2-yl)cyclohex-2-en-1-ylidene]octa-2,4,6-trienoic acid(Non-covalent)

3T2.1: 19 residues within 4Å: Chain A: I.41, A.44, A.45, Q.48, W.78, N.79, L.82, F.86, R.89, I.97, L.99, A.100, V.115, F.119, V.122, C.205, H.208, L.209, F.212 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.44, A:A.45, A:Q.48, A:W.78, A:N.79, A:L.82, A:F.86, A:F.86, A:F.86, A:I.97, A:V.115, A:F.119, A:V.122, A:H.208, A:L.209, A:F.212 Hydrogen bonds: A:A.100 Water bridges: A:R.89 Salt bridges: A:R.89 3T2.2: 19 residues within 4Å: Chain C: I.41, A.44, A.45, Q.48, W.78, N.79, L.82, F.86, R.89, I.97, L.99, A.100, V.115, F.119, V.122, C.205, H.208, L.209, F.212 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:A.44, C:A.45, C:Q.48, C:W.78, C:N.79, C:L.82, C:F.86, C:F.86, C:F.86, C:I.97, C:V.115, C:F.119, C:V.122, C:H.208, C:L.209, C:F.212 Hydrogen bonds: C:A.100 Water bridges: C:R.89 Salt bridges: C:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Atigadda, V.R. et al., Conformationally Defined Rexinoids and Their Efficacy in the Prevention of Mammary Cancers. J.Med.Chem. (2015)

Release Date

2015-09-16

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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