SMTL ID : 7pdq.1

Crystal structure of a mutated form of RXRalpha ligand binding domain in complex with LG100268 and a coactivator fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

hetero-2-2-mer

Ligands

2 x LG2: 6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID(Non-covalent)

LG2.1: 22 residues within 4Å: Chain A: V.48, I.51, C.52, A.54, A.55, Q.58, W.88, N.89, L.92, I.93, F.96, I.107, L.109, A.110, V.125, I.128, F.129, V.132, Q.215, H.218, L.219, F.222 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.51, A:A.55, A:W.88, A:L.92, A:I.93, A:F.96, A:F.96, A:F.96, A:I.128, A:V.132, A:Q.215, A:H.218 Hydrogen bonds: A:A.110 Water bridges: A:F.96 LG2.2: 22 residues within 4Å: Chain C: V.48, I.51, C.52, A.54, A.55, Q.58, W.88, N.89, L.92, I.93, F.96, I.107, L.109, A.110, V.125, I.128, F.129, V.132, Q.215, H.218, L.219, F.222 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:I.51, C:A.55, C:W.88, C:L.92, C:I.93, C:F.96, C:F.96, C:F.96, C:I.128, C:V.132, C:Q.215, C:H.218 Hydrogen bonds: C:A.110 Water bridges: C:F.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

le Maire, A. et al., Design and in vitro characterization of RXR variants as tools to investigate the biological role of endogenous rexinoids. J.Mol.Endocrinol. (2022)

Release Date

2022-08-03

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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