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SMTL ID : 5mxo.1

Crystal structure of 14-3-3sigma and a p53 C-terminal 12-mer synthetic phosphopeptide stabilized by Fusicoccin-A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x PHE- LYS- TPO: p53 C-terminal 12 amino acids(Non-covalent)

PHE-LYS-TPO.1:

14 residues within 4Å:

Chain A: K.54, R.61, R.134, Y.135, L.179, N.180, V.183, Y.186, E.187, L.227, D.230, N.231, L.234, W.235

23 PLIP interactions:

23 interactions with chain A

Hydrophobic interactions: A:V.183, A:Y.186, A:E.187, A:L.227, A:D.230, A:L.234
Hydrogen bonds: A:Y.135, A:N.180, A:E.187, A:N.231, A:N.231
Water bridges: A:K.54, A:R.61, A:R.61, A:R.61, A:Y.135, A:E.138, A:N.180, A:D.230
Salt bridges: A:R.61, A:R.134
pi-Stacking: A:W.235, A:W.235

PHE-LYS-TPO.5:

14 residues within 4Å:

Chain B: K.54, R.61, R.134, Y.135, L.179, N.180, V.183, Y.186, E.187, L.227, D.230, N.231, L.234, W.235

24 PLIP interactions:

24 interactions with chain B

Hydrophobic interactions: B:V.183, B:Y.186, B:E.187, B:L.227, B:D.230, B:L.234
Hydrogen bonds: B:Y.135, B:N.180, B:E.187, B:D.230, B:N.231, B:N.231
Water bridges: B:K.54, B:R.61, B:R.61, B:R.61, B:Y.135, B:E.138, B:N.180, B:D.230
Salt bridges: B:R.61, B:R.134
pi-Stacking: B:W.235, B:W.235

2 x FSC: FUSICOCCIN(Non-covalent)

FSC.2:	19 residues within 4Å: Chain A: E.19, M.27, E.44, N.47, L.48, S.50, V.51, K.54, F.124, K.127, M.128, D.131, P.172, I.173, G.176, K.219, D.220, L.223, I.224 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.47, A:F.124, A:I.173, A:D.220, A:L.223, A:I.224 Hydrogen bonds: A:K.127 Water bridges: A:N.47, A:N.47, A:N.47, A:D.220
FSC.6:	19 residues within 4Å: Chain B: E.19, M.27, E.44, N.47, L.48, S.50, V.51, K.54, F.124, K.127, M.128, D.131, P.172, I.173, G.176, K.219, D.220, L.223, I.224 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:N.47, B:F.124, B:I.173, B:D.220, B:L.223, B:I.224 Hydrogen bonds: B:K.127, B:D.220 Water bridges: B:N.47, B:N.47, B:N.47, B:D.220

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain B: M.6, K.14, F.30 Ligand excluded by PLIP
CL.7:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain B: E.88, Y.89, K.92 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4:	2 residues within 4Å: Chain A: E.166, M.167 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.166, H₂O.6, H₂O.7, H₂O.8
MG.8:	2 residues within 4Å: Chain B: E.166, M.167 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.166, H₂O.17, H₂O.19, H₂O.20

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Doveston, R.G. et al., Small-molecule stabilization of the p53 - 14-3-3 protein-protein interaction. FEBS Lett. (2017)

Release Date

2017-11-08

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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