6xwd.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 6xwd.1

14-3-3 sigma bound to canonical mono-phosphorylated aminopeptidase N (APN, CD13) binding motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x LYS- ASN- ALA- ASN- SEP- SER- PRO- VAL: Amino peptidase N 38-46(Non-covalent)

LYS-ASN-ALA-ASN-SEP-SER-PRO-VAL.1:

18 residues within 4Å:

Chain A: N.47, S.50, K.54, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, E.187, I.224, L.227, D.230, N.231, W.235

23 PLIP interactions:

23 interactions with chain A

Hydrophobic interactions: A:I.224, A:W.235
Hydrogen bonds: A:S.50, A:S.50, A:R.65, A:R.65, A:Y.135, A:N.180, A:N.180, A:N.231, A:N.231, A:N.231
Water bridges: A:K.54, A:R.61, A:R.61, A:R.61, A:R.61, A:K.127, A:D.230, A:D.230
Salt bridges: A:R.61, A:K.127, A:R.134

LYS-ASN-ALA-ASN-SEP-SER-PRO-VAL.7:

18 residues within 4Å:

Chain B: N.47, S.50, K.54, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, E.187, I.224, L.227, D.230, N.231, W.235

20 PLIP interactions:

20 interactions with chain B

Hydrophobic interactions: B:I.224, B:W.235
Hydrogen bonds: B:S.50, B:R.65, B:R.65, B:N.180, B:N.180, B:E.187, B:N.231, B:N.231, B:N.231
Water bridges: B:K.54, B:R.61, B:R.61, B:R.61, B:R.61, B:K.127
Salt bridges: B:R.61, B:K.127, B:R.134

4 x NA: SODIUM ION(Non-functional Binders)

NA.2:	3 residues within 4Å: Chain A: K.82, E.85 Chain B: Q.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.13, B:Q.13
NA.3:	1 residues within 4Å: Chain A: E.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.166
NA.8:	3 residues within 4Å: Chain A: Q.13 Chain B: K.82, E.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.13, A:Q.13
NA.9:	1 residues within 4Å: Chain B: E.166 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.166

2 x CA: CALCIUM ION(Non-covalent)

CA.4:	4 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain B: K.14 No protein-ligand interaction detected (PLIP)
CA.10:	4 residues within 4Å: Chain A: K.14 Chain B: E.88, Y.89, K.92 No protein-ligand interaction detected (PLIP)

4 x MG: MAGNESIUM ION(Non-covalent)

MG.5:	3 residues within 4Å: Chain A: E.40, E.115, G.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.2, H₂O.10
MG.6:	1 residues within 4Å: Chain A: E.7 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.7, H₂O.3, H₂O.10, H₂O.12
MG.11:	3 residues within 4Å: Chain B: E.40, E.115, G.117 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.40, B:E.40, B:E.115, H₂O.18, H₂O.26
MG.12:	1 residues within 4Å: Chain B: E.7 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.7, H₂O.19, H₂O.27, H₂O.28

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kiehstaller, S. et al., MMP activation-associated aminopeptidase N reveals a bivalent 14-3-3 binding motif. J.Biol.Chem. (2020)

Release Date

2020-11-04

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

Related Entries With Identical Sequence

3iqj.1 | 3iqu.1 | 3iqv.1 | 3mhr.1 | 4fl5.1 | 4iea.1 | 4jc3.1 | 4jdd.1 | 4y32.1 | 4y3b.1 | 4y5i.1 | 5hf3.1 | 5mhc.1 | 5moc.1 | 5mxo.1 | 5my9.1 | 5myc.1 | 5n5r.1 | 5n5t.1 | 5n5w.1 | 5n75.1 | 5oeh.1 | 6fau.1 | 6fav.1 | 6faw.1 | 6fbb.1 | 6fbw.1 | 6fby.1 | 6fcp.1 | 6fi4.1 more...less...

6fi5.1 | 6g6x.1 | 6g8i.1 | 6g8j.1 | 6g8k.1 | 6g8l.1 | 6g8p.1 | 6g8q.1 | 6ghp.1 | 6nv2.1 | 6qdr.1 | 6qds.1 | 6qdt.1 | 6qdu.1 | 6qiu.1 | 6r5l.1 | 6rhc.1 | 6rp6.1 | 6sin.1 | 6sio.1 | 6sip.1 | 6siq.1 | 6slv.1 | 6tch.1 | 6tjm.1 | 6tl3.1 | 6w0l.1 | 6y58.1 | 6ye9.1 | 6yia.1 | 6yib.1 | 6yic.1 | 6ylu.1 | 6yow.1 | 6yoy.1 | 6yp2.1 | 6yp3.1 | 6yp8.1 | 6ypl.1 | 6ypy.1 | 6yq2.1 | 6yr5.1 | 6yr5.2 | 6yr6.1 | 6yr6.2 | 6yr7.1 | 6zcj.1 | 7aew.1 | 7b13.1 | 7b15.1 | 7nv4.1 | 7nvi.1 | 7nws.1 | 7nxs.1 | 7nxt.1 | 7nxw.1 | 7nxy.1 | 7ny4.1 | 7nye.1 | 7nyf.1 | 7nyg.1 | 7nz6.1 | 7nzg.1 | 7nzk.1 | 7nzv.1 | 7o07.1 | 7o34.1 | 7o3a.1 | 7o3f.1 | 7o3p.1 | 7o3q.1 | 7o3r.1 | 7o3s.1 | 7o57.1 | 7o59.1 | 7o5a.1 | 7o5c.1 | 7o5d.1 | 7o5f.1 | 7o5g.1 | 7o5o.1 | 7o5p.1 | 7o5s.1 | 7o5u.1 | 7o5x.1 | 7o6f.1 | 7o6g.1 | 7o6i.1 | 7o6j.1 | 7o6k.1 | 7o6m.1 | 7o6o.1 | 7pwt.1 | 7pwz.1 | 7zmu.1 | 7zmw.1 | 8a62.1 | 8a65.1 | 8a68.1 | 8a6f.1 | 8a6h.1 | 8adm.1 | 8afn.1 | 8ai0.1 | 8alr.1 | 8alt.1 | 8alv.1 | 8alw.1 | 8am7.1 | 8anf.1 | 8aoy.1 | 8aps.1 | 8aq1.1 | 8aqc.1 | 8aqe.1 | 8aqz.1 | 8ar4.1 | 8ar5.1 | 8arg.1 | 8aro.1 | 8arq.1 | 8arr.1 | 8arw.1 | 8arx.1 | 8ary.1 | 8arz.1 | 8as1.1 | 8at9.1 | 8atp.1 | 8atr.1 | 8ats.1 | 8au2.1 | 8aus.1 | 8auy.1 | 8av0.1 | 8av3.1 | 8av4.1 | 8av8.1 | 8awg.1 | 8axe.1 | 8axu.1 | 8aze.1 | 8b39.1 | 8bi7.1 | 8btq.1 | 8bwe.1 | 8bwh.1 | 8bwj.1 | 8bwx.1 | 8bwz.1 | 8bx0.1 | 8bx3.1 | 8bx4.1 | 8bxi.1 | 8bxm.1 | 8bxn.1 | 8bxo.1 | 8bxq.1 | 8bxs.1 | 8by9.1 | 8byb.1 | 8byc.1 | 8byd.1 | 8bye.1 | 8byf.1 | 8byg.1 | 8byo.1 | 8byy.1 | 8byz.1 | 8bz0.1 | 8bz9.1 | 8bza.1 | 8bzf.1 | 8c0k.1 | 8c1y.1 | 8c28.1 | 8c2d.1 | 8c2e.1 | 8c2f.1 | 8c2g.1 | 8c2y.1 | 8c30.1 | 8c3c.1 | 8c3z.1 | 8c40.1 | 8c42.1 | 8c43.1 | 8c4f.1 | 8c4g.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top