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SMTL ID : 8bxs.1
Fragment-linked stabilizer for ERa - 14-3-3 interaction (1075293)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
homo-dimer
Ligands
2 x
PHE
-
PRO
-
ALA
-
TPO
-
VAL
:
ERalpha peptide
(Non-covalent)
PHE-PRO-ALA-TPO-VAL.1:
17 residues within 4Å:
Chain A:
K.54
,
R.61
,
R.65
,
K.127
,
R.134
,
Y.135
,
G.176
,
L.179
,
N.180
,
V.183
,
E.187
,
I.224
,
L.227
,
N.231
,
L.234
,
W.235
Ligands:
S2E.2
21
PLIP interactions
:
21 interactions with chain A
Hydrophobic interactions:
A:L.179
,
A:V.183
,
A:L.227
,
A:W.235
Hydrogen bonds:
A:K.54
,
A:Y.135
,
A:N.180
,
A:N.180
,
A:N.180
,
A:N.231
,
A:N.231
Water bridges:
A:R.61
,
A:R.61
,
A:R.61
,
A:R.61
,
A:K.127
Salt bridges:
A:K.54
,
A:K.54
,
A:R.61
,
A:K.127
,
A:R.134
PHE-PRO-ALA-TPO-VAL.3:
17 residues within 4Å:
Chain B:
K.54
,
R.61
,
R.65
,
K.127
,
R.134
,
Y.135
,
G.176
,
L.179
,
N.180
,
V.183
,
E.187
,
I.224
,
L.227
,
N.231
,
L.234
,
W.235
Ligands:
S2E.4
20
PLIP interactions
:
20 interactions with chain B
Hydrophobic interactions:
B:L.179
,
B:V.183
,
B:L.227
,
B:W.235
Hydrogen bonds:
B:K.54
,
B:Y.135
,
B:N.180
,
B:N.180
,
B:N.231
,
B:N.231
Water bridges:
B:R.61
,
B:R.61
,
B:R.61
,
B:R.61
,
B:K.127
Salt bridges:
B:K.54
,
B:K.54
,
B:R.61
,
B:K.127
,
B:R.134
2 x
S2E
:
~{N}-[3-(5-carbamimidoylthiophen-3-yl)phenyl]-4-(4-chloranylphenoxy)oxane-4-carboxamide
(Non-covalent)
S2E.2:
17 residues within 4Å:
Chain A:
K.16
,
E.19
,
M.27
,
C.43
,
E.44
,
N.47
,
L.48
,
S.50
,
V.51
,
F.124
,
K.127
,
P.172
,
I.173
,
G.176
,
L.223
,
I.224
Ligands:
PHE-PRO-ALA-TPO-VAL.1
4
PLIP interactions
:
4 interactions with chain A
Hydrophobic interactions:
A:N.47
,
A:I.224
Hydrogen bonds:
A:E.19
,
A:E.19
S2E.4:
17 residues within 4Å:
Chain B:
K.16
,
E.19
,
M.27
,
C.43
,
E.44
,
N.47
,
L.48
,
S.50
,
V.51
,
F.124
,
K.127
,
P.172
,
I.173
,
G.176
,
L.223
,
I.224
Ligands:
PHE-PRO-ALA-TPO-VAL.3
4
PLIP interactions
:
4 interactions with chain B
Hydrophobic interactions:
B:N.47
,
B:I.224
Hydrogen bonds:
B:E.19
,
B:E.19
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Visser, E.J. et al., From Tethered to Freestanding Stabilizers of 14-3-3 Protein-Protein Interactions through Fragment Linking. Angew.Chem.Int.Ed.Engl. (2023)
Release Date
2023-08-02
Peptides
14-3-3 protein sigma:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
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Clustal Format
PNG Image
Secondary Structure
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Fade Mismatches
Enhance Mismatches
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2° Structure
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Size
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14-3-3 protein sigma
Toggle Identical (AB)
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Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme