6tch.1 | SWISS-MODEL Template Library

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SMTL ID : 6tch.1

Binary complex of 14-3-3 sigma and a high-affinity non-canonical 9-mer peptide binder

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-mer

Ligands

8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.2:	1 residues within 4Å: Chain A: E.7 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.7, H₂O.1, H₂O.9, H₂O.12
MG.3:	1 residues within 4Å: Chain A: E.193 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.193, H₂O.7
MG.4:	1 residues within 4Å: Chain A: E.80 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.80, H₂O.7
MG.6:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.7:	1 residues within 4Å: Chain C: E.7 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.7, H₂O.15, H₂O.22, H₂O.26
MG.8:	1 residues within 4Å: Chain C: E.193 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.193, H₂O.20
MG.9:	1 residues within 4Å: Chain C: E.80 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.80, H₂O.21

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.10:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Quartararo, A.J. et al., Ultra-large chemical libraries for the discovery of high-affinity peptide binders. Nat Commun (2020)

Release Date

2020-07-01

Peptides

14-3-3 protein sigma: AC
DLY-NVA-PPN-KCJ-SEP-PPN-B3S-BAL-PPN-LYS: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

B
A

D
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

DLY-NVA-PPN-KCJ-SEP-PPN-B3S-BAL-PPN-LYS

Toggle Identical (BD)

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