6g8q.1 | SWISS-MODEL Template Library

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SMTL ID : 6g8q.1

14-3-3sigma in complex with a A130beta3A and Q133beta3Q mutated YAP pS127 phosphopeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1:	4 residues within 4Å: Chain A: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.2, H₂O.9
CA.7:	4 residues within 4Å: Chain C: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.40, C:E.40, C:E.115, H₂O.16, H₂O.23

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.3:	4 residues within 4Å: Chain A: H.185, A.189, S.191, E.194 Ligand excluded by PLIP
CL.8:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP
CL.9:	4 residues within 4Å: Chain C: H.185, A.189, S.191, E.194 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.4:	4 residues within 4Å: Chain A: K.82, G.83, E.85 Chain C: Q.13 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Water bridges: C:S.10 Hydrogen bonds: A:E.85
NA.5:	2 residues within 4Å: Chain A: E.166, M.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.166
NA.6:	1 residues within 4Å: Chain A: E.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.7
NA.10:	4 residues within 4Å: Chain A: Q.13 Chain C: K.82, G.83, E.85 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Water bridges: A:S.10 Hydrogen bonds: C:K.82
NA.11:	2 residues within 4Å: Chain C: E.166, M.167 No protein-ligand interaction detected (PLIP)
NA.12:	1 residues within 4Å: Chain C: E.7 2 PLIP interactions: 2 interactions with chain C Water bridges: C:E.7, C:E.7

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Andrei, S.A. et al., A study on the effect of synthetic alpha-to-beta3-amino acid mutations on the binding of phosphopeptides to 14-3-3 proteins. Chem.Commun.(Camb.) (2019)

Release Date

2019-04-17

Peptides

14-3-3 protein sigma: AC
Transcriptional coactivator YAP1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Transcriptional coactivator YAP1

Toggle Identical (BD)

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