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SMTL ID : 8btq.1

Small molecule stabilizer for 14-3-3/ChREBP (Cmd1-soaking)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-mer

Ligands

6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.2:	1 residues within 4Å: Chain A: E.7 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.7, H₂O.2, H₂O.4
MG.3:	1 residues within 4Å: Chain A: E.94 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.94, H₂O.1, H₂O.2
MG.5:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.6:	1 residues within 4Å: Chain C: E.7 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.7, H₂O.10, H₂O.13
MG.7:	1 residues within 4Å: Chain C: E.94 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.94, H₂O.9, H₂O.10

2 x OQE: [2-[2-oxidanylidene-2-(2-phenylethylamino)ethoxy]phenyl]phosphonic acid(Non-covalent)

OQE.4:	10 residues within 4Å: Chain A: K.54, R.61, R.134, Y.135, L.179, L.227 Chain B: I.4, N.8, W.11, R.12 15 PLIP interactions: 6 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:I.4, B:W.11, B:W.11, A:K.54, A:L.179, A:L.227 Hydrogen bonds: B:R.12, B:R.12, A:R.61, A:R.61, A:R.134, A:R.134, A:N.180 Water bridges: B:N.8 pi-Cation interactions: A:R.61
OQE.8:	10 residues within 4Å: Chain C: K.54, R.61, R.134, Y.135, L.179, L.227 Chain D: I.4, N.8, W.11, R.12 16 PLIP interactions: 6 interactions with chain D, 10 interactions with chain C Hydrophobic interactions: D:I.4, D:W.11, D:W.11, C:K.54, C:L.179, C:L.227 Hydrogen bonds: D:R.12, D:R.12, C:R.61, C:R.61, C:R.134, C:R.134, C:Y.135, C:N.180 Water bridges: D:N.8 pi-Cation interactions: C:R.61

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Katz, L.S. et al., Molecular glues of the regulatory ChREBP/14-3-3 complex protect beta cells from glucolipotoxicity. Biorxiv (2024)

Release Date

2024-05-01

Peptides

14-3-3 protein sigma: AC
Carbohydrate-responsive element-binding protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Carbohydrate-responsive element-binding protein

Toggle Identical (BD)

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