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SMTL ID : 7zmu.1

14-3-3s binding to non-natural peptide 2d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x SEP- PPN- B3S- BAL- PPN- LYS- NH2: non-natural peptide 2(Non-covalent)

SEP-PPN-B3S-BAL-PPN-LYS-NH2.1:

21 residues within 4Å:

Chain A: N.47, S.50, V.51, K.54, R.61, F.124, K.127, R.134, Y.135, P.172, I.173, G.176, L.177, L.179, N.180, V.183, D.216, D.220, L.223, I.224, L.227

30 PLIP interactions:

30 interactions with chain A

Hydrophobic interactions: A:N.47, A:V.51, A:F.124, A:P.172, A:I.173, A:L.179, A:L.223, A:I.224, A:L.227
Hydrogen bonds: A:N.47, A:N.47, A:S.50, A:K.127, A:Y.135, A:P.172, A:N.180, A:N.180, A:D.216, A:D.216
Water bridges: A:K.54, A:K.54, A:K.54, A:K.54, A:K.54, A:K.54, A:R.61, A:D.131
Salt bridges: A:K.54, A:R.61, A:R.134

SEP-PPN-B3S-BAL-PPN-LYS-NH2.4:

21 residues within 4Å:

Chain B: N.47, S.50, V.51, K.54, R.61, F.124, K.127, R.134, Y.135, P.172, I.173, G.176, L.177, L.179, N.180, V.183, D.216, D.220, L.223, I.224, L.227

28 PLIP interactions:

28 interactions with chain B

Hydrophobic interactions: B:N.47, B:V.51, B:F.124, B:P.172, B:I.173, B:L.179, B:L.223, B:I.224, B:L.227
Hydrogen bonds: B:N.47, B:N.47, B:S.50, B:K.127, B:Y.135, B:P.172, B:N.180, B:N.180, B:D.216
Water bridges: B:K.54, B:K.54, B:K.54, B:K.54, B:K.54, B:K.54, B:R.61
Salt bridges: B:K.54, B:R.61, B:R.134

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	1 residues within 4Å: Chain A: E.7 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.7, H₂O.1, H₂O.9
MG.3:	3 residues within 4Å: Chain A: R.90, E.91, E.94 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.94, H₂O.6
MG.5:	1 residues within 4Å: Chain B: E.7 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.7, H₂O.10, H₂O.19
MG.6:	3 residues within 4Å: Chain B: R.90, E.91, E.94 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.94, H₂O.16

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Somsen, B.A. et al., Functional mapping of the 14-3-3 hub protein as a guide to design 14-3-3 molecular glues. Chem Sci (2022)

Release Date

2022-11-23

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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