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SMTL ID : 7o07.1

14-3-3sigma covalently bound to peptide (chloroacetamide-Cys interaction)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

hetero-2-2-mer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1:	1 residues within 4Å: Chain A: E.80 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.80, H₂O.8
MG.2:	2 residues within 4Å: Chain A: E.40, E.115 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.8, H₂O.9
MG.3:	1 residues within 4Å: Chain A: E.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.7, H₂O.1
MG.4:	1 residues within 4Å: Chain A: E.94 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.94, H₂O.1, H₂O.2, H₂O.8, H₂O.8
MG.5:	1 residues within 4Å: Chain C: E.80 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.80, H₂O.20
MG.6:	2 residues within 4Å: Chain C: E.40, E.115 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.40, C:E.40, C:E.115, H₂O.20, H₂O.21
MG.7:	1 residues within 4Å: Chain C: E.7 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.7, H₂O.13
MG.8:	1 residues within 4Å: Chain C: E.94 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.94, H₂O.13, H₂O.14, H₂O.21, H₂O.21

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Tivon, B. et al., Covalent flexible peptide docking in Rosetta. Chem Sci (2021)

Release Date

2021-10-13

Peptides

14-3-3 protein sigma: AC
Transcriptional coactivator YAP1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Transcriptional coactivator YAP1

Toggle Identical (BD)

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