6qdr.1 | SWISS-MODEL Template Library

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SMTL ID : 6qdr.1

Crystal structure of 14-3-3sigma in complex with a PAK6 pT99 phosphopeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-2-2-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1:	4 residues within 4Å: Chain A: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.6, H₂O.10
CA.2:	1 residues within 4Å: Chain A: E.7 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.7, H₂O.4, H₂O.11, H₂O.12, H₂O.16
CA.8:	4 residues within 4Å: Chain C: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.40, C:E.40, C:E.115, H₂O.22, H₂O.27
CA.9:	1 residues within 4Å: Chain C: E.7 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.7, H₂O.20, H₂O.27, H₂O.29, H₂O.32

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.10:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4:	2 residues within 4Å: Chain A: E.166, M.167 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.166, H₂O.4, H₂O.6, H₂O.10
MG.11:	2 residues within 4Å: Chain C: E.166, M.167 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.166, H₂O.20, H₂O.23, H₂O.26

6 x NA: SODIUM ION(Non-functional Binders)

NA.5:	3 residues within 4Å: Chain A: R.90, E.91, E.94 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.94, A:E.94
NA.6:	4 residues within 4Å: Chain A: K.82, G.83, E.85 Chain C: Q.13 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:K.82, C:Q.13
NA.7:	2 residues within 4Å: Chain A: G.4, K.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.4
NA.12:	3 residues within 4Å: Chain C: R.90, E.91, E.94 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.94
NA.13:	4 residues within 4Å: Chain A: Q.13 Chain C: K.82, G.83, E.85 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Q.13, C:K.82
NA.14:	2 residues within 4Å: Chain C: G.4, K.37 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kaplan, A. et al., Polypharmacological Perturbation of the 14-3-3 Adaptor Protein Interactome Stimulates Neurite Outgrowth. Cell Chem Biol (2020)

Release Date

2020-01-29

Peptides

14-3-3 protein sigma: AC
Serine/threonine-protein kinase PAK 6: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Serine/threonine-protein kinase PAK 6

Toggle Identical (BD)

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