SMTL ID : 8a62.1

Small molecule stabilizer (compound 2) for FOXO1 and 14-3-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-mer

Ligands

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Chain A: R.90, E.91, E.94 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.94, H2O.1, H2O.2, H2O.10 MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain C: R.90, E.91, E.94 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.94, H2O.15, H2O.16, H2O.24

2 x L7L: (3~{S})-1-[3,5-bis(chloranyl)-4-oxidanyl-phenyl]carbonyl-~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]piperidine-3-carboxamide(Non-covalent)

L7L.3: 14 residues within 4Å: Chain A: C.43, E.44, N.47, S.50, V.51, F.124, K.127, P.172, I.173, G.176, D.220, I.224 Chain B: W.6, P.7 10 PLIP interactions: 1 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:W.6, A:S.50 Hydrophobic interactions: A:P.172, A:I.173, A:D.220 Water bridges: A:S.50, A:S.50, A:S.50, A:K.127 Halogen bonds: A:N.47 L7L.6: 14 residues within 4Å: Chain C: C.43, E.44, N.47, S.50, V.51, F.124, K.127, P.172, I.173, G.176, D.220, I.224 Chain D: W.6, P.7 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:P.172, C:I.173, C:D.220 Hydrogen bonds: C:S.50, D:W.6 Water bridges: C:S.50, C:S.50, C:S.50, C:K.127 Halogen bonds: C:N.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kenanova, D.N. et al., A Systematic Approach to the Discovery of Protein-Protein Interaction Stabilizers. Acs Cent.Sci. (2023)

Release Date

2023-04-26

Peptides

14-3-3 protein sigma: AC
Forkhead box protein O1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

14-3-3 protein sigma

Forkhead box protein O1

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