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SMTL ID : 8a6f.1

Small molecule stabilizer (compound 8) for C-RAF and 14-3-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1:	5 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: K.14, F.30 Ligand excluded by PLIP
CL.5:	5 residues within 4Å: Chain A: K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	3 residues within 4Å: Chain A: R.90, E.91, E.94 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.94, H₂O.1, H₂O.3, H₂O.7, H₂O.9
MG.3:	1 residues within 4Å: Chain A: E.80 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.80
MG.6:	3 residues within 4Å: Chain C: R.90, E.91, E.94 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.94, H₂O.13, H₂O.15, H₂O.20, H₂O.22
MG.7:	1 residues within 4Å: Chain C: E.80 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.80

2 x O56: 1-[4-[4-chloranyl-3-(trifluoromethyl)phenyl]-4-oxidanyl-piperidin-1-yl]-3-[2-(dimethylamino)ethyldisulfanyl]propan-1-one(Non-covalent)

O56.4:	14 residues within 4Å: Chain A: C.43, R.46, N.47, E.120, F.124, P.172, I.173, D.220, L.223, I.224, L.227 Chain B: T.6, P.7, V.9 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.124, A:P.172, A:I.173, A:I.224, A:I.224, B:V.9
O56.8:	14 residues within 4Å: Chain C: C.43, R.46, N.47, E.120, F.124, P.172, I.173, D.220, L.223, I.224, L.227 Chain D: T.6, P.7, V.9 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:F.124, C:P.172, C:I.173, C:I.224, C:I.224, D:V.9

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kenanova, D.N. et al., A Systematic Approach to the Discovery of Protein-Protein Interaction Stabilizers. Acs Cent.Sci. (2023)

Release Date

2023-04-26

Peptides

14-3-3 protein sigma: AC
RAF proto-oncogene serine/threonine-protein kinase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

RAF proto-oncogene serine/threonine-protein kinase

Toggle Identical (BD)

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