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SMTL ID : 8a65.1

Small molecule stabilizer (compound 3) for FOXO1 and 14-3-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ARG- SEP- CSO- TPO- TRP- PRO- LEU- PRO: Forkhead box protein O1(Non-covalent)

ARG-SEP-CSO-TPO-TRP-PRO-LEU-PRO.1:

21 residues within 4Å:

Chain A: S.50, K.54, N.55, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.223, I.224, L.227, N.231, L.234, W.235
Ligands: L70.4

26 PLIP interactions:

26 interactions with chain A

Hydrophobic interactions: A:L.179, A:V.183, A:L.223, A:L.227
Hydrogen bonds: A:R.65, A:N.180, A:N.180, A:E.187, A:E.187, A:E.187, A:N.231, A:N.231
Water bridges: A:K.54, A:N.55, A:N.55, A:R.61, A:R.61, A:R.61, A:R.65, A:E.138, A:E.138, A:N.180
Salt bridges: A:R.61, A:R.134, A:E.138, A:E.187

ARG-SEP-CSO-TPO-TRP-PRO-LEU-PRO.5:

21 residues within 4Å:

Chain B: S.50, K.54, N.55, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.223, I.224, L.227, N.231, L.234, W.235
Ligands: L70.8

27 PLIP interactions:

27 interactions with chain B

Hydrophobic interactions: B:L.179, B:V.183, B:L.223, B:L.227
Hydrogen bonds: B:R.65, B:Y.135, B:N.180, B:N.180, B:E.187, B:E.187, B:N.231, B:N.231
Water bridges: B:K.54, B:N.55, B:N.55, B:R.61, B:R.61, B:R.61, B:R.61, B:R.61, B:E.138, B:E.138, B:N.180
Salt bridges: B:R.61, B:R.134, B:E.138, B:E.187

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.3:	1 residues within 4Å: Chain A: E.94 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.94, H₂O.2
MG.6:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.7:	1 residues within 4Å: Chain B: E.94 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.94, H₂O.14

2 x L70: (3~{S})-1-[2-azanyl-3,5-bis(chloranyl)phenyl]carbonyl-~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]piperidine-3-carboxamide(Non-covalent)

L70.4:	11 residues within 4Å: Chain A: C.43, E.44, N.47, S.50, F.124, K.127, P.172, I.173, D.220, I.224 Ligands: ARG-SEP-CSO-TPO-TRP-PRO-LEU-PRO.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.124
L70.8:	11 residues within 4Å: Chain B: C.43, E.44, N.47, S.50, F.124, K.127, P.172, I.173, D.220, I.224 Ligands: ARG-SEP-CSO-TPO-TRP-PRO-LEU-PRO.5 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.124

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kenanova, D.N. et al., A Systematic Approach to the Discovery of Protein-Protein Interaction Stabilizers. Acs Cent.Sci. (2023)

Release Date

2023-04-26

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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