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SMTL ID : 8bz9.1

single soak stabilizer for ERa - 14-3-3 interaction (AZ354)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x PHE- PRO- ALA- TPO- VAL: ERalpha peptide(Non-covalent)

PHE-PRO-ALA-TPO-VAL.1:

16 residues within 4Å:

Chain A: K.54, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, E.187, I.224, L.227, N.231, L.234, W.235

23 PLIP interactions:

23 interactions with chain A

Hydrophobic interactions: A:L.179, A:V.183, A:L.227, A:W.235
Hydrogen bonds: A:Y.135, A:N.180, A:N.180, A:N.180, A:N.231, A:N.231
Water bridges: A:K.54, A:K.54, A:K.54, A:R.61, A:R.65, A:K.127, A:K.127, A:D.131
Salt bridges: A:K.54, A:K.54, A:R.61, A:K.127, A:R.134

PHE-PRO-ALA-TPO-VAL.6:

16 residues within 4Å:

Chain B: K.54, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, E.187, I.224, L.227, N.231, L.234, W.235

22 PLIP interactions:

22 interactions with chain B

Hydrophobic interactions: B:L.179, B:V.183, B:L.227, B:W.235
Hydrogen bonds: B:Y.135, B:N.180, B:N.180, B:N.231, B:N.231
Water bridges: B:K.54, B:K.54, B:K.54, B:R.61, B:R.65, B:K.127, B:K.127, B:D.131
Salt bridges: B:K.54, B:K.54, B:R.61, B:K.127, B:R.134

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.3:	1 residues within 4Å: Chain A: E.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.7, H₂O.1
MG.7:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.8:	1 residues within 4Å: Chain B: E.7 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.7, H₂O.12

4 x LF5: 4-chloranyl-7-propan-2-yloxy-1-benzothiophene-2-carboximidamide(Non-covalent)

LF5.4:	6 residues within 4Å: Chain A: E.19, C.43, E.44, N.47, L.48, V.51 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.47 Hydrogen bonds: A:E.19, A:E.19
LF5.5:	10 residues within 4Å: Chain A: Q.98, D.102, L.105, G.106, D.109, Y.133, L.136, D.144, R.147, I.148 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.136, A:I.148, A:I.148 Hydrogen bonds: A:D.102, A:D.102, A:Y.133 Water bridges: A:D.109 Halogen bonds: A:Q.98
LF5.9:	6 residues within 4Å: Chain B: E.19, C.43, E.44, N.47, L.48, V.51 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.47 Hydrogen bonds: B:E.19, B:E.19
LF5.10:	10 residues within 4Å: Chain B: Q.98, D.102, L.105, G.106, D.109, Y.133, L.136, D.144, R.147, I.148 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.136, B:I.148, B:I.148 Hydrogen bonds: B:D.102, B:Y.133 Halogen bonds: B:Q.98

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Visser, E.J. et al., From Tethered to Freestanding Stabilizers of 14-3-3 Protein-Protein Interactions through Fragment Linking. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-08-30

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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