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SMTL ID : 3iqu.1

Crystal Structure of human 14-3-3 sigma in Complex with Raf1 peptide (6mer)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-dimer

Ligands

2 x GLN- ARG- SER- THR- SEP- THR: 6-mer from RAF proto-oncogene serine/threonine-protein kinase(Non-covalent)

GLN-ARG-SER-THR-SEP-THR.1:

16 residues within 4Å:

Chain A: K.54, R.61, R.65, K.127, R.134, Y.135, E.138, G.176, L.179, N.180, V.183, E.187, L.227, N.231, L.234, W.235

32 PLIP interactions:

32 interactions with chain A

Hydrophobic interactions: A:L.179, A:L.227, A:L.234
Hydrogen bonds: A:R.61, A:N.180, A:N.180, A:N.180, A:E.187, A:D.230, A:N.231, A:N.231
Water bridges: A:K.54, A:K.54, A:K.54, A:K.54, A:K.54, A:R.61, A:R.61, A:R.61, A:R.61, A:R.65, A:R.65, A:K.127, A:E.138, A:L.234, A:L.234
Salt bridges: A:K.54, A:K.54, A:R.61, A:K.127, A:R.134, A:E.138

GLN-ARG-SER-THR-SEP-THR.6:

16 residues within 4Å:

Chain B: K.54, R.61, R.65, K.127, R.134, Y.135, E.138, G.176, L.179, N.180, V.183, E.187, L.227, N.231, L.234, W.235

34 PLIP interactions:

34 interactions with chain B

Hydrophobic interactions: B:L.179, B:L.227, B:L.234
Hydrogen bonds: B:R.61, B:Y.135, B:N.180, B:N.180, B:E.187, B:E.187, B:D.230, B:N.231, B:N.231, B:N.231
Water bridges: B:K.54, B:K.54, B:K.54, B:K.54, B:K.54, B:R.61, B:R.61, B:R.61, B:R.61, B:R.65, B:R.65, B:K.127, B:E.138, B:L.234, B:L.234
Salt bridges: B:K.54, B:K.54, B:R.61, B:K.127, B:R.134, B:E.138

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:	4 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain B: K.14 Ligand excluded by PLIP
CL.7:	4 residues within 4Å: Chain A: K.14 Chain B: E.88, Y.89, K.92 Ligand excluded by PLIP

6 x MG: MAGNESIUM ION(Non-covalent)

MG.3:	1 residues within 4Å: Chain A: E.94 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.94, H₂O.7, H₂O.7, H₂O.8, H₂O.10
MG.4:	1 residues within 4Å: Chain A: E.80 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.80
MG.5:	1 residues within 4Å: Chain A: E.7 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.7, H₂O.8, H₂O.11
MG.8:	1 residues within 4Å: Chain B: E.94 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.94, H₂O.26, H₂O.26, H₂O.27, H₂O.29
MG.9:	1 residues within 4Å: Chain B: E.80 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.80
MG.10:	1 residues within 4Å: Chain B: E.7 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.7, H₂O.27, H₂O.29

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Molzan, M. et al., Impaired binding of 14-3-3 to C-RAF in Noonan syndrome suggests new approaches in diseases with increased Ras signaling. Mol.Cell.Biol. (2010)

Release Date

2010-09-01

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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