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SMTL ID : 8adm.1

Ternary complex of 14-3-3 sigma, Usp8pS718 phosphopeptide and small molecule stabilizer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x ARG- SER- TYR- SEP- SER- PRO- ASP- ILE: Ubiquitin carboxyl-terminal hydrolase 8(Non-covalent)

ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.1:

23 residues within 4Å:

Chain A: N.47, S.50, V.51, K.54, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.223, I.224, L.227, D.230, N.231, L.234, W.235
Ligands: O6C.2

23 PLIP interactions:

23 interactions with chain A

Hydrophobic interactions: A:K.54, A:L.227, A:D.230
Hydrogen bonds: A:S.50, A:R.61, A:R.65, A:Y.135, A:N.180, A:N.180, A:E.187, A:E.187, A:N.231, A:N.231, A:W.235
Water bridges: A:K.54, A:K.54, A:K.54, A:K.54, A:K.127, A:K.127
Salt bridges: A:K.54, A:R.61, A:R.134

ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.3:

23 residues within 4Å:

Chain B: N.47, S.50, V.51, K.54, R.61, R.65, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.223, I.224, L.227, D.230, N.231, L.234, W.235
Ligands: O6C.4

25 PLIP interactions:

25 interactions with chain B

Hydrophobic interactions: B:K.54, B:L.227, B:D.230
Hydrogen bonds: B:S.50, B:R.61, B:R.65, B:Y.135, B:N.180, B:N.180, B:E.187, B:E.187, B:E.187, B:E.187, B:N.231, B:N.231, B:W.235
Water bridges: B:K.54, B:K.54, B:K.54, B:K.54, B:K.127, B:K.127
Salt bridges: B:K.54, B:R.61, B:R.134

2 x O6C: 1-[2-(4-chloranylphenoxy)-2-methyl-propanoyl]-~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]piperidine-4-carboxamide(Non-covalent)

O6C.2:	15 residues within 4Å: Chain A: C.43, E.44, R.46, N.47, F.124, K.127, P.172, I.173, G.176, D.220, L.223, I.224 Ligands: ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.1, ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.1, ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.223 Hydrogen bonds: A:R.46 Water bridges: A:N.47
O6C.4:	15 residues within 4Å: Chain B: C.43, E.44, R.46, N.47, F.124, K.127, P.172, I.173, G.176, D.220, L.223, I.224 Ligands: ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.3, ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.3, ARG-SER-TYR-SEP-SER-PRO-ASP-ILE.3 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.223 Hydrogen bonds: B:R.46 Water bridges: B:N.47

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kenanova, D.N. et al., A Systematic Approach to the Discovery of Protein-Protein Interaction Stabilizers. Acs Cent.Sci. (2023)

Release Date

2023-04-26

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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