SMTL ID : 8c30.1

Crystal structure of 14-3-3 in complex with PyrinpS242 and a protein/peptide interface fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 463: N-[3-(aminomethyl)phenyl]acetamide(Non-covalent)

463.1: 13 residues within 4Å: Chain A: N.47, S.50, V.51, F.124, K.127, P.172, I.173, G.176, L.177, I.224 Chain B: L.7, V.9 Ligands: PE5.2 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.51, A:I.224, B:L.7, B:L.7, B:V.9 Hydrogen bonds: A:S.50, A:P.172, A:G.176, A:L.177 463.5: 13 residues within 4Å: Chain C: N.47, S.50, V.51, F.124, K.127, P.172, I.173, G.176, L.177, I.224 Chain D: L.7, V.9 Ligands: PE5.6 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:V.51, C:I.224, D:L.7, D:L.7, D:V.9 Hydrogen bonds: C:S.50, C:P.172, C:G.176, C:L.177

2 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.2: 8 residues within 4Å: Chain A: N.47, P.172, D.220, L.223, I.224 Chain B: E.8, T.10 Ligands: 463.1 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.47 Hydrophobic interactions: B:T.10 PE5.6: 8 residues within 4Å: Chain C: N.47, P.172, D.220, L.223, I.224 Chain D: E.8, T.10 Ligands: 463.5 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.47 Water bridges: C:D.220 Hydrophobic interactions: D:T.10

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: E.193 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.193 MG.7: 1 residues within 4Å: Chain C: E.193 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.193

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 1 residues within 4Å: Chain A: E.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.7, H2O.1 CA.8: 1 residues within 4Å: Chain C: E.7 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.7, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ottmann, C. et al., 14-3-3/Pyrin complex. To Be Published

Release Date

2024-01-10

Peptides

14-3-3 protein sigma: AC
Pyrin: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

C
AAA

B
PPP

D
PPP

14-3-3 protein sigma

Pyrin

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