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SMTL ID : 6y58.1

Binary complex of 14-3-3 sigma (C38N) with the Estrogen Related Receptor gamma (LBD) phosphopeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x ARG- SER- LEU- SEP- PHE- GLU: Estrogen Related Receptor gamma phosphopeptide(Non-covalent)

ARG-SER-LEU-SEP-PHE-GLU.1:

18 residues within 4Å:

Chain A: R.61, K.127, R.134, Y.135, P.172, I.173, G.176, L.179, N.180, V.183, Y.186, E.187, I.224, L.227, D.230, N.231, L.234, W.235

17 PLIP interactions:

17 interactions with chain A

Hydrophobic interactions: A:I.224, A:D.230, A:L.234
Hydrogen bonds: A:Y.135, A:N.180, A:N.180, A:E.187, A:N.231, A:N.231, A:W.235
Water bridges: A:R.61, A:R.61, A:R.61, A:R.61, A:N.180
Salt bridges: A:R.61, A:R.134

ARG-SER-LEU-SEP-PHE-GLU.5:

18 residues within 4Å:

Chain B: R.61, K.127, R.134, Y.135, P.172, I.173, G.176, L.179, N.180, V.183, Y.186, E.187, I.224, L.227, D.230, N.231, L.234, W.235

20 PLIP interactions:

20 interactions with chain B

Hydrophobic interactions: B:I.224, B:D.230, B:L.234
Hydrogen bonds: B:Y.135, B:N.180, B:N.180, B:E.187, B:E.187, B:N.231, B:N.231, B:W.235
Water bridges: B:R.61, B:R.61, B:R.61, B:R.61, B:N.180, B:E.187, B:E.187
Salt bridges: B:R.61, B:R.134

6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.3:	2 residues within 4Å: Chain A: E.166, M.167 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.166, H₂O.3, H₂O.8, H₂O.10
MG.4:	3 residues within 4Å: Chain A: E.40, E.115, G.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.7, H₂O.7
MG.6:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MG.7:	2 residues within 4Å: Chain B: E.166, M.167 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.166, H₂O.14, H₂O.19, H₂O.21
MG.8:	3 residues within 4Å: Chain B: E.40, E.115, G.117 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.40, B:E.40, B:E.115, H₂O.18, H₂O.18

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sijbesma, E. et al., Fluorescence Anisotropy-Based Tethering for Discovery of Protein-Protein Interaction Stabilizers. Acs Chem.Biol. (2020)

Release Date

2020-11-18

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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