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SMTL ID : 6qds.1

Crystal structure of 14-3-3sigma in complex with a PAK6 pT99 phosphopeptide stabilized by semi-synthetic fusicoccane FC-NCPC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

hetero-2-2-mer

Ligands

2 x HY5: FC-NCPC(Non-covalent)

HY5.1:

19 residues within 4Å:

Chain A: E.19, M.27, E.44, N.47, L.48, S.50, V.51, K.54, F.124, K.127, M.128, P.172, I.173, G.176, K.219, D.220, L.223, I.224
Chain B: L.8

14 PLIP interactions:

13 interactions with chain A, 1 interactions with chain B

Hydrophobic interactions: A:E.44, A:L.48, A:F.124, A:I.173, A:L.223, A:I.224, B:L.8
Hydrogen bonds: A:K.127, A:D.220, A:D.220
Water bridges: A:N.47, A:N.47, A:N.47, A:D.220

HY5.5:

19 residues within 4Å:

Chain C: E.19, M.27, E.44, N.47, L.48, S.50, V.51, K.54, F.124, K.127, M.128, P.172, I.173, G.176, K.219, D.220, L.223, I.224
Chain D: L.8

13 PLIP interactions:

12 interactions with chain C, 1 interactions with chain D

Hydrophobic interactions: C:E.44, C:L.48, C:F.124, C:I.173, C:L.223, C:I.224, D:L.8
Hydrogen bonds: C:K.127, C:D.220
Water bridges: C:N.47, C:N.47, C:N.47, C:D.220

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.6:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP

4 x NA: SODIUM ION(Non-functional Binders)

NA.3:	4 residues within 4Å: Chain A: K.82, G.83, E.85 Chain C: Q.13 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.13 Water bridges: C:S.10
NA.4:	2 residues within 4Å: Chain A: E.7, R.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.7
NA.7:	4 residues within 4Å: Chain A: Q.13 Chain C: K.82, G.83, E.85 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:K.82 Water bridges: A:S.10
NA.8:	2 residues within 4Å: Chain C: E.7, R.8 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kaplan, A. et al., Polypharmacological Perturbation of the 14-3-3 Adaptor Protein Interactome Stimulates Neurite Outgrowth. Cell Chem Biol (2020)

Release Date

2020-01-29

Peptides

14-3-3 protein sigma: AC
Serine/threonine-protein kinase PAK 6: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Serine/threonine-protein kinase PAK 6

Toggle Identical (BD)

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