SMTL ID : 6djx.1

Crystal Structure of pParkin-pUb-UbcH7 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.128, C.131, C.158, C.165 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.128, A:C.131, A:C.158, A:C.165 ZN.2: 4 residues within 4Å: Chain A: C.113, C.116, C.182, H.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.113, A:C.116, A:C.182, A:H.185 ZN.3: 4 residues within 4Å: Chain A: C.209, C.212, C.231, C.234 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.209, A:C.212, A:C.231, A:C.234 ZN.4: 4 residues within 4Å: Chain A: C.224, H.228, C.260, C.264 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.224, A:H.228, A:C.260, A:C.264 ZN.5: 5 residues within 4Å: Chain A: C.332, N.334, C.335, H.340, C.344 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.332, A:C.335, A:H.340, A:C.344 ZN.6: 4 residues within 4Å: Chain A: C.303, C.308, C.323, C.327 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.303, A:C.308, A:C.323, A:C.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauve, V. et al., Mechanism of parkin activation by phosphorylation. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-07-04

Peptides

RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase: A
Ubiquitin: B
Ubiquitin-conjugating enzyme E2 L3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase

Ubiquitin

Ubiquitin-conjugating enzyme E2 L3

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