SMTL ID : 6hdo.1

Crystal structure of human ATAD2 bromodomain in complex with 8-(((1R,2R,3R,5S)-2-(2-(1,1-dioxidotetrahydro-2H-thiopyran-4-yl)ethyl)-8-azabicyclo[3.2.1]octan-3-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)quinolin-2(1H)-one

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.114 Water bridges: A:L.115 EDO.2: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116

1 x FZH: 8-[[(1~{S},2~{R},3~{R},5~{R})-2-[2-[1,1-bis(oxidanylidene)thian-4-yl]ethyl]-8-azabicyclo[3.2.1]octan-3-yl]amino]-3-methyl-5-(5-methylpyridin-3-yl)-1~{H}-quinolin-2-one(Non-covalent)

FZH.3: 14 residues within 4Å: Chain A: V.30, V.35, D.36, E.39, V.40, Y.43, Y.85, N.86, D.90, G.92, D.93, L.95, I.96, R.99 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35, A:V.40 Hydrogen bonds: A:D.36, A:N.86, A:N.86, A:N.86, A:D.90

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.9, R.12, R.16 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.9 Salt bridges: A:R.12, A:R.16 SO4.5: 1 residues within 4Å: Chain A: K.64 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bamborough, P. et al., Aiming to Miss a Moving Target: Bromo and Extra Terminal Domain (BET) Selectivity in Constrained ATAD2 Inhibitors. J. Med. Chem. (2018)

Release Date

2018-09-26

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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