SMTL ID : 6q00.1

TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.85 Å

Oligo State

hetero-1-1-mer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: G.47 Chain B: A.15, S.16, Y.40 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:G.47, B:Y.40, H2O.1, H2O.7, H2O.9 K.2: 3 residues within 4Å: Chain B: S.39, Y.40, E.42 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.39, B:Y.40, B:E.42, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schellenberg, M.J. et al., Ubiquitin stimulated reversal of topoisomerase 2 DNA-protein crosslinks by TDP2. Nucleic Acids Res. (2020)

Release Date

2020-04-29

Peptides

Ubiquitin: A
Tyrosyl-DNA phosphodiesterase 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin

Tyrosyl-DNA phosphodiesterase 2

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