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SMTL ID : 7dty.1

Structural basis of ligand selectivity conferred by the human glucose-dependent insulinotropic polypeptide receptor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

6 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	3 residues within 4Å: Chain A: L.297, L.301, V.335 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.301, A:V.335
CLR.2:	3 residues within 4Å: Chain A: H.221, A.245, M.284 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.245
CLR.3:	7 residues within 4Å: Chain A: I.112, M.119, A.347, F.350, A.351, G.354, F.358 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.112, A:A.347, A:F.350, A:F.358, A:F.358, A:F.358
CLR.4:	3 residues within 4Å: Chain A: R.196, T.197 Ligands: CLR.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.196
CLR.5:	3 residues within 4Å: Chain A: W.276, I.277, T.280 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.276, A:W.276
CLR.6:	6 residues within 4Å: Chain A: N.154, T.157, Y.204, L.239, W.243 Ligands: CLR.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.157, A:Y.204, A:L.239, A:W.243

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhao, F. et al., Structural insights into hormone recognition by the human glucose-dependent insulinotropic polypeptide receptor. Elife (2021)

Release Date

2021-08-04

Peptides

human glucose-dependent insulinotropic polypeptide receptor: A
Gastric inhibitory polypeptide: B
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E
Nanobody-35: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
P

C
A

D
B

E
G

F
N

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

human glucose-dependent insulinotropic polypeptide receptor

Gastric inhibitory polypeptide

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody-35

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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