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SMTL ID : 7e2z.1

Aripiprazole-bound serotonin 1A (5-HT1A) receptor-Gi protein complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 9SC: 7-[4-[4-[2,3-bis(chloranyl)phenyl]piperazin-1-yl]butoxy]-3,4-dihydro-1H-quinolin-2-one(Non-covalent)

9SC.1:

15 residues within 4Å:

Chain D: Y.217, Q.218, F.233, D.237, V.238, C.241, T.242, I.310, S.320, T.321, A.324, F.482, F.483, N.507, Y.511

5 PLIP interactions:

5 interactions with chain D

Hydrophobic interactions: D:F.233, D:A.324
Salt bridges: D:D.237
pi-Stacking: D:Y.217, D:F.483

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:	11 residues within 4Å: Chain D: Y.156, T.160, L.163, L.164, Q.218, L.501, A.504, I.505, W.508, S.512 Ligands: CLR.3 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:L.163, D:L.164, D:Q.218, D:L.501, D:A.504, D:I.505, D:W.508 Hydrogen bonds: D:Y.156, D:Y.156, D:Q.218
CLR.3:	8 residues within 4Å: Chain D: V.465, K.466, G.469, I.470, L.477, L.516 Ligands: CLR.2, J40.5 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.477, D:L.516
CLR.4:	5 residues within 4Å: Chain D: Q.529, F.532, K.533, I.536 Ligands: J40.5 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Q.529, D:F.532, D:I.536

1 x J40: [(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate(Non-covalent)

J40.5:

18 residues within 4Å:

Chain A: C.351, G.352
Chain D: C.170, L.173, G.174, R.255, K.463, K.466, T.467, I.470, I.471, I.520, Y.523, F.524, N.525, K.526
Ligands: CLR.3, CLR.4

14 PLIP interactions:

13 interactions with chain D, 1 interactions with chain A

Hydrophobic interactions: D:L.173, D:I.470, D:Y.523, D:F.524
Hydrogen bonds: D:I.520, D:N.525, D:K.526, D:K.526, A:C.351
Salt bridges: D:R.255, D:K.463, D:K.466, D:K.466, D:K.526

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Xu, P. et al., Structural insights into the lipid and ligand regulation of serotonin receptors. Nature (2021)

Release Date

2021-04-14

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Soluble cytochrome b562,5-hydroxytryptamine receptor 1A: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
R

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Soluble cytochrome b562,5-hydroxytryptamine receptor 1A

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6ot0.1 | 6p9x.1 | 6p9y.1 | 6pb0.1 | 6pb1.1 | 6pt0.1 | 6uun.1 | 6uus.1 | 6uva.1 | 6vcb.1 | 6vn7.1 | 6wha.1 | 6whc.1 | 6wi9.1 | 6wpw.1 | 6wzg.1 | 6xbj.1 | 6xbk.1 | 6xbl.1 | 6xbm.1 | 6xox.1 | 7aue.1 | 7bb6.1 | 7bb7.1 | 7bw0.1 | 7c2e.1 | 7ckw.1 | 7ckx.1 | 7cky.1 | 7ckz.1 | 7cmu.1 | 7cmv.1 | 7crh.1 | 7cx2.1 | 7cx3.1 | 7cx4.1 | 7cz5.1 | 7d68.1 | 7d76.1 | 7d77.1 | 7d7m.1 | 7dty.1 | 7duq.1 | 7dur.1 | 7dw9.1 | 7e14.1 | 7e2x.1 | 7e2y.1 | 7e32.1 | 7e33.1 | 7e9g.1 | 7e9h.1 | 7eb2.1 | 7eib.1 | 7ej0.1 | 7ej8.1 | 7eja.1 | 7ejk.1 | 7ejx.1 | 7eo2.1 | 7eo4.1 | 7ept.1 | 7eq1.1 | 7euo.1 | 7evy.1 | 7evz.1 | 7ew0.1 | 7ew1.1 | 7ew2.1 | 7ew3.1 | 7ew4.1 | 7ew7.1 | 7exd.1 | 7ezh.1 | 7ezk.1 | 7ezm.1 | 7f16.1 | 7f1q.1 | 7f1r.1 | 7f1s.1 | 7f2o.1 | 7f4d.1 | 7f4f.1 | 7f4h.1 | 7f4i.1 | 7f53.1 | 7f54.1 | 7f55.1 | 7f58.1 | 7f8v.1 | 7f8w.1 | 7f9y.1 | 7f9z.1 | 7fig.1 | 7fih.1 | 7fii.1 | 7fim.1 | 7fin.1 | 7fiy.1 | 7joz.1 | 7jvr.1 | 7ld3.1 | 7ld4.1 | 7mbx.1 | 7mby.1 | 7mts.1 | 7p00.1 | 7p02.1 | 7piu.1 | 7piv.1 | 7qvm.1 | 7ra3.1 | 7ran.1 | 7rbt.1 | 7rg9.1 | 7rgp.1 | 7s8l.1 | 7s8m.1 | 7s8n.1 | 7s8o.1 | 7s8p.1 | 7sbf.1 | 7scg.1 | 7sf7.1 | 7sf8.1 | 7srr.1 | 7t10.1 | 7t11.1 | 7t2g.1 | 7t2h.1 | 7t6b.1 | 7t8x.1 | 7t90.1 | 7t94.1 | 7t96.1 | 7t9i.1 | 7t9n.1 | 7tmw.1 | 7trk.1 | 7trp.1 | 7trq.1 | 7trs.1 | 7try.1 | 7ts0.1 | 7tuz.1 | 7tyf.1 | 7tyh.1 | 7tyi.1 | 7tyl.1 | 7tyn.1 | 7tyo.1 | 7tyw.1 | 7tyx.1 | 7tyy.1 | 7tzf.1 | 7u2k.1 | 7u2l.1 | 7um5.1 | 7um6.1 | 7um7.1 | 7utz.1 | 7v35.1 | 7v68.1 | 7v69.1 | 7v6a.1 | 7v9l.1 | 7v9m.1 | 7vbh.1 | 7vbi.1 | 7vfx.1 | 7vie.1 | 7vif.1 | 7vig.1 | 7vih.1 | 7vkt.1 | 7vl8.1 | 7vl9.1 | 7vla.1 | 7vqx.1 | 7vug.1 | 7vuh.1 | 7vui.1 | 7vuj.1 | 7w0l.1 | 7w0m.1 | 7w0n.1 | 7w0o.1 | 7w0p.1 | 7w2z.1 | 7w55.1 | 7w57.1 | 7w6p.1 | 7w7e.1 | 7wbj.1 | 7wcm.1 | 7wcn.1 | 7wf7.1 | 7wic.1 | 7wig.1 | 7wj5.1 | 7wkd.1 | 7wq3.1 | 7wq4.1 | 7wu2.1 | 7wu3.1 | 7wu4.1 | 7wu5.1 | 7wu9.1 | 7wuj.1 | 7wuq.1 | 7wv9.1 | 7wvu.1 | 7wvv.1 | 7wvw.1 | 7wvx.1 | 7wvy.1 | 7wxu.1 | 7wxw.1 | 7wy0.1 | 7wy5.1 | 7wy8.1 | 7wyb.1 | 7wz4.1 | 7wz7.1 | 7x10.1 | 7x2v.1 | 7x5h.1 | 7x8r.1 | 7x8s.1 | 7x9a.1 | 7x9b.1 | 7x9c.1 | 7x9y.1 | 7xa3.1 | 7xat.1 | 7xau.1 | 7xav.1 | 7xbd.1 | 7xbw.1 | 7xbx.1 | 7xk2.1 | 7xk8.1 | 7xmr.1 | 7xms.1 | 7xmt.1 | 7xou.1 | 7xov.1 | 7xow.1 | 7xp4.1 | 7xp5.1 | 7xp6.1 | 7xt8.1 | 7xt9.1 | 7xta.1 | 7xtb.1 | 7xtc.1 | 7xv3.1 | 7xw5.1 | 7xw6.1 | 7xw9.1 | 7xwo.1 | 7xxh.1 | 7xxi.1 | 7xz5.1 | 7xz6.1 | 7y12.1 | 7y15.1 | 7y3g.1 | 7y64.1 | 7y65.1 | 7y66.1 | 7y67.1 | 7yac.1 | 7yae.1 | 7ydh.1 | 7ydj.1 | 7ydm.1 | 7ydp.1 | 7yfc.1 | 7yfd.1 | 7yj4.1 | 7yk6.1 | 7yk7.1 | 7ykd.1 | 7yon.1 | 7yoo.1 | 7yp7.1 | 7ys6.1 | 8dpf.1 | 8dpg.1 | 8dph.1 | 8dpi.1 | 8dwc.1 | 8dwg.1 | 8dwh.1 | 8dzp.1 | 8dzq.1 | 8dzr.1 | 8dzs.1 | 8e3x.1 | 8e3y.1 | 8e3z.1 | 8e9w.1 | 8e9x.1 | 8e9y.1 | 8e9z.1 | 8f0j.1 | 8f0k.1 | 8f2a.1 | 8f2b.1 | 8f76.1 | 8feg.1 | 8fmz.1 | 8fn0.1 | 8fn1.1 | 8fu6.1 | 8fx5.1 | 8fy8.1 | 8fyx.1 | 8g05.1 | 8g2y.1 | 8g59.1 | 8g94.1 | 8gag.1 | 8gcm.1 | 8gdz.1 | 8ge1.1 | 8ge2.1 | 8ge3.1 | 8ge4.1 | 8ge5.1 | 8ge6.1 | 8ge7.1 | 8ge8.1 | 8ge9.1 | 8gea.1 | 8geb.1 | 8gec.1 | 8ged.1 | 8gee.1 | 8gef.1 | 8geg.1 | 8geh.1 | 8gei.1 | 8gej.1 | 8gfv.1 | 8gfw.1 | 8gfx.1 | 8gfy.1 | 8gfz.1 | 8gg0.1 | 8gg1.1 | 8gg2.1 | 8gg3.1 | 8gg4.1 | 8gg5.1 | 8gg6.1 | 8gg7.1 | 8gg8.1 | 8gg9.1 | 8gga.1 | 8ggb.1 | 8ggc.1 | 8gge.1 | 8ggf.1 | 8ghv.1 | 8guq.1 | 8gur.1 | 8gus.1 | 8gut.1 | 8gy7.1 | 8h0p.1 | 8h0q.1 | 8h4i.1 | 8h4k.1 | 8h4l.1 | 8h8j.1 | 8ha0.1 | 8haf.1 | 8hao.1 | 8hbd.1 | 8hcq.1 | 8hcx.1 | 8hdo.1 | 8hdp.1 | 8hj5.1 | 8hk2.1 | 8hk3.1 | 8hk5.1 | 8hn8.1 | 8hnk.1 | 8hnl.1 | 8hnm.1 | 8hoc.1 | 8hqc.1 | 8hsc.1 | 8hti.1 | 8i2g.1 | 8i95.1 | 8i97.1 | 8i9a.1 | 8i9l.1 | 8i9s.1 | 8ia2.1 | 8ia7.1 | 8ia8.1 | 8id3.1 | 8id4.1 | 8id6.1 | 8id8.1 | 8id9.1 | 8iec.1 | 8ied.1 | 8ikg.1 | 8ikh.1 | 8ikl.1 | 8inr.1 | 8ioc.1 | 8iod.1 | 8iq4.1 | 8iq6.1 | 8irs.1 | 8irt.1 | 8iru.1 | 8irv.1 | 8itl.1 | 8itm.1 | 8iu2.1 | 8iuk.1 | 8iul.1 | 8ium.1 | 8iy9.1 | 8iyh.1 | 8iys.1 | 8iyw.1 | 8iz4.1 | 8izb.1 | 8j18.1 | 8j19.1 | 8j1a.1 | 8j20.1 | 8j21.1 | 8j22.1 | 8j23.1 | 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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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