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SMTL ID : 7fin.1

Cryo-EM structure of the GIPR/GLP-1R/GCGR triagonist peptide 20-bound human GIPR-Gs complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

7 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	4 residues within 4Å: Chain A: L.297, L.301, T.322, V.331 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.297, A:L.297, A:L.301, A:T.322, A:V.331
CLR.2:	2 residues within 4Å: Chain A: R.115, V.118 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.118
CLR.3:	3 residues within 4Å: Chain A: R.320, L.370, I.374 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.370, A:I.374
CLR.4:	4 residues within 4Å: Chain A: R.196, T.197, I.200, Y.258 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.196, A:T.197, A:I.200, A:Y.258
CLR.5:	4 residues within 4Å: Chain A: A.273, W.276, I.277, T.280 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.273, A:W.276, A:W.276, A:I.277
CLR.6:	4 residues within 4Å: Chain A: N.154, Y.204, L.239, W.243 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.204, A:L.239, A:W.243
CLR.7:	5 residues within 4Å: Chain A: L.214, V.218, H.221, L.241, A.245 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.214, A:V.218, A:L.241, A:A.245

1 x GGL: GAMMA-L-GLUTAMIC ACID(Covalent)

GGL.8:

3 residues within 4Å:

Chain A: E.114, Q.117
Chain B: K.10

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhao, F. et al., Structural insights into multiplexed pharmacological actions of tirzepatide and peptide 20 at the GIP, GLP-1 or glucagon receptors. Nat Commun (2022)

Release Date

2022-02-23

Peptides

Gastric inhibitory polypeptide receptor,human glucose-dependent insulinotropic polypeptide receptor: A
Peptide 20: B
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E
Nanobody-35: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
P

C
A

D
B

E
G

F
N

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Gastric inhibitory polypeptide receptor,human glucose-dependent insulinotropic polypeptide receptor

Peptide 20

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody-35

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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