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SMTL ID : 7mts.1

CryoEM Structure of mGlu2 - Gi Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-mer

Ligands

1 x ZQY: 2-methoxy-6-propyl-N-(2-{4-[(1H-tetrazol-5-yl)methoxy]phenyl}ethyl)thieno[2,3-d]pyrimidin-4-amine(Non-covalent)

ZQY.1:

13 residues within 4Å:

Chain A: F.606, L.622, G.623, F.626, R.707, M.711, S.714, L.715, N.718, I.722, W.756, F.763, M.777

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:L.715, A:I.722
Hydrogen bonds: A:S.714
pi-Stacking: A:F.606, A:F.626
pi-Cation interactions: A:R.707

2 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.2:	11 residues within 4Å: Chain A: R.40, R.44, S.126, Y.127, S.128, A.149, S.150, T.151, Y.199, D.278, K.360 7 PLIP interactions: 7 interactions with chain A, Hydrogen bonds: A:S.126, A:S.128, A:T.151, A:T.151 Salt bridges: A:R.40, A:R.44, A:K.360
GLU.4:	11 residues within 4Å: Chain B: R.40, R.44, S.126, Y.127, S.128, A.149, S.150, T.151, Y.199, D.278, K.360 8 PLIP interactions: 7 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:S.128, B:T.151, B:T.151, B:D.278, E.4 Salt bridges: B:R.40, B:R.44, B:K.360

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3:	3 residues within 4Å: Chain A: F.184, N.186, L.478 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.478 Hydrogen bonds: A:F.184, A:N.186
NAG.5:	2 residues within 4Å: Chain B: F.184, N.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.184, B:N.186

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Seven, A.B. et al., G-protein activation by a metabotropic glutamate receptor. Nature (2021)

Release Date

2021-07-07

Peptides

Metabotropic glutamate receptor 2: AB
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Metabotropic glutamate receptor 2

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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8ge6.1 | 8ge7.1 | 8ge8.1 | 8ge9.1 | 8gea.1 | 8geb.1 | 8gec.1 | 8ged.1 | 8gee.1 | 8gef.1 | 8geg.1 | 8geh.1 | 8gei.1 | 8gej.1 | 8gfv.1 | 8gfw.1 | 8gfx.1 | 8gfy.1 | 8gfz.1 | 8gg0.1 | 8gg1.1 | 8gg2.1 | 8gg3.1 | 8gg4.1 | 8gg5.1 | 8gg6.1 | 8gg7.1 | 8gg8.1 | 8gg9.1 | 8gga.1 | 8ggb.1 | 8ggc.1 | 8gge.1 | 8ggf.1 | 8ghv.1 | 8guq.1 | 8gur.1 | 8gus.1 | 8gut.1 | 8gy7.1 | 8h0p.1 | 8h0q.1 | 8h2g.1 | 8h4i.1 | 8h4k.1 | 8h4l.1 | 8h8j.1 | 8ha0.1 | 8haf.1 | 8hao.1 | 8hbd.1 | 8hcq.1 | 8hcx.1 | 8hdo.1 | 8hdp.1 | 8hj5.1 | 8hn8.1 | 8hnk.1 | 8hnl.1 | 8hnm.1 | 8hoc.1 | 8hqc.1 | 8hsc.1 | 8hti.1 | 8i2g.1 | 8i7v.1 | 8i7w.1 | 8i95.1 | 8i97.1 | 8i9a.1 | 8i9l.1 | 8i9s.1 | 8ia2.1 | 8ia8.1 | 8ic0.1 | 8id3.1 | 8id4.1 | 8id6.1 | 8id8.1 | 8id9.1 | 8iec.1 | 8ied.1 | 8ikg.1 | 8ikh.1 | 8ikl.1 | 8inr.1 | 8ioc.1 | 8iod.1 | 8iq4.1 | 8iq6.1 | 8irs.1 | 8irt.1 | 8iru.1 | 8irv.1 | 8itl.1 | 8itm.1 | 8iu2.1 | 8iuk.1 | 8iul.1 | 8ium.1 | 8iy5.1 | 8iy9.1 | 8iyh.1 | 8iys.1 | 8iyw.1 | 8iz4.1 | 8izb.1 | 8j18.1 | 8j19.1 | 8j1a.1 | 8j20.1 | 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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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