SMTL ID : 7vug.1

Cryo-EM structure of a class A orphan GPCR in complex with Gi

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 7ZQ: 3-chloranyl-N-[2-oxidanylidene-2-[[(1S)-1-phenylethyl]amino]ethyl]benzamide(Non-covalent)

7ZQ.1: 14 residues within 4Å: Chain D: I.292, F.297, E.317, E.320, I.324, W.378, I.381, W.382, W.453, R.456, S.479, N.483, A.486, L.487 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:I.292, D:I.292, D:F.297, D:E.320, D:I.324, D:I.381, D:W.382, D:W.453, D:N.483, D:A.486, D:L.487, D:L.487 Hydrogen bonds: D:E.320, D:W.378, D:R.456, D:N.483

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Molecular insights into ligand recognition and G protein coupling of the neuromodulatory orphan receptor GPR139. Cell Res. (2022)

Release Date

2021-12-29

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Chimera of Endo-1,4-beta-xylanase and Probable G-protein coupled receptor 139: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
R

E
S

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Chimera of Endo-1,4-beta-xylanase and Probable G-protein coupled receptor 139

scFv16

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