SMTL ID : 7xv3.1

Cryo-EM structure of LPS-bound GPR174 in complex with Gs protein

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x WJS: (2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid(Non-covalent)

WJS.1: 15 residues within 4Å: Chain A: Y.26, R.75, Y.79, F.95, Y.99, I.106, Y.107, F.152, R.156, F.169, Y.246, F.250, F.254, K.257, H.274 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.106, A:F.152, A:F.250, A:F.254 Hydrogen bonds: A:Y.26, A:Y.79, A:Y.99, A:F.169, A:Y.246, A:Y.246 Water bridges: A:R.18 Salt bridges: A:R.75, A:K.98, A:R.156, A:R.156, A:K.257, A:K.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, J. et al., Structural basis of lysophosphatidylserine receptor GPR174 ligand recognition and activation. Nat Commun (2023)

Release Date

2023-02-15

Peptides

Probable G-protein coupled receptor 174: A
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: B
Engineered G protein subunit S (mini-Gs): C
Nb35: D
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
G

C
A

D
N

E
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Probable G-protein coupled receptor 174

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Engineered G protein subunit S (mini-Gs)

Nb35

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Related Entries With Identical Sequence