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SMTL ID : 7y8r.1

The nucleosome-bound human PBAF complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1:

17 residues within 4Å:

Chain J: V.753, K.755, Q.758, L.783, G.784, K.785, T.786, I.787, N.817, E.821, W.825, L.1163, N.1164, Q.1166, R.1192, I.1193
Ligands: BEF.3

11 PLIP interactions:

11 interactions with chain J

Hydrogen bonds: J:V.753, J:K.755, J:Q.758, J:K.785, J:T.786, J:N.817, J:L.1163, J:Q.1166
Salt bridges: J:R.1192, J:R.1192
pi-Stacking: J:W.825

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2:

5 residues within 4Å:

Chain J: K.785, D.881, E.882, G.1162
Ligands: BEF.3

2 PLIP interactions:

2 interactions with chain J

Metal complexes: J:D.881, J:D.881

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.3:

8 residues within 4Å:

Chain J: M.781, G.782, L.783, K.785, R.1189, R.1192
Ligands: ADP.1, MG.2

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wang, L. et al., Structure of nucleosome-bound human PBAF complex. Nat Commun (2022)

Release Date

2022-12-07

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A type 1-C: CG
Histone H2B: DH
Unknown: I
Transcription activator BRG1: J
ACTB protein (Fragment): K
Actin-like protein 6A: L
AT-rich interactive domain-containing protein 2: M
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1: N
SWI/SNF complex subunit SMARCC2: OQ
Unknown: P
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1: R
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1: S
PHD finger protein 10: T
Bromodomain-containing protein 7: U
Unkown: V
Protein polybromo-1: W
Unknown: X
Unknown: 0

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

I
Z

J
I

K
J

L
K

M
L

N
M

O
N

Q
O

P
a

R
P

S
Q

T
R

U
S

V
T

W
U

X
V

0
W

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3

Histone H4

Histone H2A type 1-C

Histone H2B

Unknown

Transcription activator BRG1

ACTB protein (Fragment)

Actin-like protein 6A

AT-rich interactive domain-containing protein 2

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

SWI/SNF complex subunit SMARCC2

Unknown

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

PHD finger protein 10

Bromodomain-containing protein 7

Unkown

Protein polybromo-1

Unknown

Unknown

Related Entries With Identical Sequence

1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2chn.1 | 2chn.2 | 2fj7.1 | 2io5.1 | 2nzd.1 | 2oan.1 | 2oan.2 | 2oan.3 | 3a0b.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 more...less...

3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 | 3lz0.1 | 3lz1.1 | 3mgp.1 | 3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3u4l.1 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4o46.5 | 4phz.1 | 4r8p.1 | 4uq8.1 | 4wu8.1 | 4wu9.1 | 4wz7.1 | 4xuj.1 | 5a31.1 | 5aj0.79 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cod.1 | 5cod.2 | 5cod.3 | 5cod.4 | 5cod.5 | 5cod.6 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5j7y.1 | 5j7y.18 | 5j7y.50 | 5ja4.1 | 5kdm.1 | 5l3t.1 | 5nl0.1 | 5nl0.2 | 5nvs.1 | 5nvu.1 | 5oxv.1 | 5oy7.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6anu.1 | 6cb1.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6f1t.1 | 6f2r.1 | 6f2r.2 | 6f2r.3 | 6f38.1 | 6f3a.1 | 6fml.1 | 6fti.1 | 6h8k.28 | 6hiv.136 | 6hiv.137 | 6hiv.138 | 6hiv.139 | 6hix.77 | 6hix.78 | 6hix.79 | 6hix.80 | 6iro.1 | 6j54.1 | 6j5a.1 | 6j5i.1 | 6j5j.1 | 6j5k.19 | 6j5k.49 | 6j5k.79 | 6j5k.109 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6lth.1 | 6ltj.1 | 6msg.1 | 6msh.1 | 6nd4.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6omb.1 | 6opc.1 | 6po1.1 | 6pp5.1 | 6qs6.1 | 6qs7.1 | 6qs8.1 | 6qt9.1 | 6r1u.1 | 6r25.1 | 6r7l.1 | 6rn3.1 | 6s01.1 | 6sg9.1 | 6sga.55 | 6sga.58 | 6sgb.55 | 6sgb.56 | 6sgb.95 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6vzr.4 | 6w1z.1 | 6w20.1 | 6w21.1 | 6w22.1 | 6w23.1 | 6w24.1 | 6w6i.1 | 6w6j.1 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 6znl.1 | 6znm.1 | 6znn.1 | 6zno.1 | 6zo4.1 | 7a08.1 | 7a5j.56 | 7a5k.2 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7fd4.1 | 7fd5.1 | 7fhk.1 | 7fhl.1 | 7fid.1 | 7fie.1 | 7fiz.1 | 7jo9.1 | 7joa.1 | 7jzv.1 | 7kra.1 | 7krz.1 | 7ksm.1 | 7ktx.1 | 7l8d.1 | 7l8t.1 | 7ln2.1 | 7ln3.1 | 7ln4.1 | 7ln5.1 | 7mhs.1 | 7nvr.1 | 7oci.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7pdz.1 | 7pks.1 | 7pua.72 | 7qj5.1 | 7qj6.1 | 7qj7.1 | 7qj8.1 | 7qj9.1 | 7qja.1 | 7qjb.1 | 7qjc.1 | 7qv1.1 | 7qv2.1 | 7qv3.1 | 7qwr.1 | 7qws.1 | 7swy.1 | 7sxo.1 | 7tan.1 | 7tn2.1 | 7tqu.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7uw9.1 | 7uwa.1 | 7uwb.1 | 7uwc.1 | 7uwd.1 | 7v1m.1 | 7v1m.2 | 7vdv.1 | 7w9v.1 | 7y5e.273 | 7y5e.600 | 7y5e.625 | 7y5e.840 | 7y7a.298 | 7y7a.323 | 7y7a.506 | 7y7a.531 | 7y7a.794 | 7y7a.819 | 7y7a.1193 | 7y7a.1218 | 7y7a.1653 | 7y7a.1678 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7z8f.1 | 7z8m.1 | 7zl3.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 7ztc.1 | 7ztd.1 | 8atf.1 | 8av6.1 | 8azw.1 | 8b2l.76 | 8b5r.1 | 8b6l.1 | 8bf9.1 | 8btk.11 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8iah.1 | 8iai.1 | 8ib2.1 | 8ib8.1 | 8ihm.1 | 8iht.1 | 8j9h.1 | 8j9i.1 | 8j9j.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oi6.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8p94.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8ptk.1 | 8px3.1 | 8q96.1 | 8qr1.1 | 8qzm.1 | 8rbx.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8tye.1 | 8uxq.1 | 8uy4.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vrd.1 | 8vrj.1 | 8vrk.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xon.1 | 8xoo.1 | 8xvg.1 | 8xvt.1 | 8yv8.1 | 9c4b.1 | 9c57.1 | 9c62.1 | 9c6n.1 | 9cc0.1 | 9f1b.31 | 9ipu.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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