SMTL ID : 8dzs.1

GR89,696 bound Kappa Opioid Receptor in complex with Gz

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x U9I: methyl (3R)-4-[(3,4-dichlorophenyl)acetyl]-3-[(pyrrolidin-1-yl)methyl]piperazine-1-carboxylate(Non-covalent)

U9I.1: 14 residues within 4Å: Chain A: T.61, F.64, Q.65, W.74, V.84, D.88, Y.89, M.92, V.180, I.240, H.241, I.244, Y.262, Y.270 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:D.88, A:Y.89, A:Y.270 Salt bridges: A:D.88 Halogen bonds: A:T.61, A:T.61, A:F.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, J. et al., Ligand and G-protein selectivity in the kappa-opioid receptor. Nature (2023)

Release Date

2023-05-03

Peptides

Kappa-type opioid receptor: A
Guanine nucleotide-binding protein G(z) subunit alpha: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
ScFv16 protein: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Kappa-type opioid receptor

Guanine nucleotide-binding protein G(z) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

ScFv16 protein

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