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SMTL ID : 8ha0.1

Molecular recognition of two endogenous hormones by the human parathyroid hormone receptor-1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

4 x CLR: CHOLESTEROL(Non-covalent)(Covalent)

CLR.1:	6 residues within 4Å: Chain F: N.332, K.333, W.335, I.336, V.339, P.340 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:K.333, F:I.336, F:V.339, F:P.340
CLR.2:	6 residues within 4Å: Chain F: W.335, L.342, V.346, M.399, A.400, P.402 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:W.335, F:W.335, F:W.335, F:L.342, F:V.346, F:A.400, F:P.402
CLR.3:	7 residues within 4Å: Chain F: F.352, V.356, R.357, A.360, L.380, T.384, I.396 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:F.352, F:V.356, F:A.360, F:L.380, F:T.384, F:I.396
CLR.4:	4 residues within 4Å: Chain F: R.160, M.163, I.164, F.424 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:I.164, F:F.424, F:F.424

3 x PLM: PALMITIC ACID(Non-covalent)

PLM.5:	2 residues within 4Å: Chain F: L.420, F.421 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:L.420, F:F.421
PLM.6:	3 residues within 4Å: Chain F: V.209, A.216 Ligands: PLM.7 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:V.209, F:A.216
PLM.7:	3 residues within 4Å: Chain F: A.216, V.217 Ligands: PLM.6 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:A.216, F:V.217

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhao, L.H. et al., Molecular recognition of two endogenous hormones by the human parathyroid hormone receptor-1. Acta Pharmacol.Sin. (2023)

Release Date

2022-12-21

Peptides

Guanine nucleotide-binding protein g(s) subunit alpha: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
Parathyroid hormone: E
Parathyroid hormone/parathyroid hormone-related peptide receptor: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
P

F
R

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein g(s) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Parathyroid hormone

Parathyroid hormone/parathyroid hormone-related peptide receptor

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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