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SMTL ID : 8iod.1

Cryo-EM structure of the PG-901-bound human melanocortin receptor 5 (MC5R)-Gs complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x ACE- NLE- ASP- PRO- 4J2- ARG- TRP- LYS- NH2: PG-901(Non-covalent)

ACE-NLE-ASP-PRO-4J2-ARG-TRP-LYS-NH2.1:

24 residues within 4Å:

Chain E: E.107, T.110, I.111, V.126, D.130, N.131, F.133, D.134, I.137, C.138, F.192, I.193, S.196, E.197, V.201, I.202, L.205, F.269, H.272, L.273, M.276, F.292, L.296
Ligands: CA.2

26 PLIP interactions:

26 interactions with chain E

Hydrophobic interactions: E:T.110, E:I.111, E:I.111, E:D.130, E:F.133, E:D.134, E:I.137, E:I.137, E:V.201, E:I.202, E:L.205, E:F.269, E:F.269, E:L.273, E:F.292, E:F.292, E:L.296
Hydrogen bonds: E:E.107, E:D.130, E:N.131, E:S.196, E:S.196, E:E.197
Salt bridges: E:D.130, E:D.134, E:E.197

1 x CA: CALCIUM ION(Non-covalent)

CA.2:

6 residues within 4Å:

Chain E: E.107, D.130, D.134
Ligands: ACE-NLE-ASP-PRO-4J2-ARG-TRP-LYS-NH2.1, ACE-NLE-ASP-PRO-4J2-ARG-TRP-LYS-NH2.1, ACE-NLE-ASP-PRO-4J2-ARG-TRP-LYS-NH2.1

4 PLIP interactions:

4 interactions with chain E

Metal complexes: E:E.107, E:D.130, E:D.134, E:D.134

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Feng, W. et al., Structural insights into ligand recognition and subtype selectivity of the human melanocortin-3 and melanocortin-5 receptors. Cell Discov (2023)

Release Date

2023-09-20

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1,HiBiT: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody-35: D
HA signal peptide,Melanocortin receptor 5,LgBiT subunit: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1,HiBiT

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody-35

HA signal peptide,Melanocortin receptor 5,LgBiT subunit

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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