SMTL ID : 9avt.1

Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-2-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.66, H.68 Chain C: T.11 7 PLIP interactions: 7 interactions with chain A Water bridges: A:T.66, A:T.66, A:T.66, A:T.66, A:T.66, A:H.68 Salt bridges: A:H.68 SO4.2: 3 residues within 4Å: Chain A: R.42 Chain B: S.65, T.66 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:T.66, B:T.66, B:T.66 Water bridges: C:Q.23 Salt bridges: A:R.42 SO4.3: 3 residues within 4Å: Chain B: T.7, T.9, K.11 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.7, B:T.7, B:T.9 Salt bridges: B:K.11 SO4.5: 2 residues within 4Å: Chain C: R.28, H.29 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.28

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.4: 2 residues within 4Å: Chain B: V.70, L.71 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.71

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain C: C.7, C.10, C.21, C.24 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:C.21, C:C.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, M.A. et al., Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin. To be published

Release Date

2024-07-31

Peptides

Ubiquitin: AB
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ubiquitin

TGF-beta-activated kinase 1 and MAP3K7-binding protein 2

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