9q87.1 | SWISS-MODEL Template Library

SMTL ID : 9q87.1

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x A- A- A- G- U- A: mRNA(Non-covalent)

1 x C- A: A-site tRNA(Non-covalent)

231 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)

403 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

3 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Leonarski, F. et al., Principles of ion binding to RNA inferred from the analysis of a 1.55 Angs. resolution bacterial ribosome structure - Part I: Mg2+. Nucleic Acids Res (2024)

Release Date

2025-05-14

Peptides

Small ribosomal subunit protein uS2: B
Small ribosomal subunit protein uS3: C
Small ribosomal subunit protein uS4: D
Small ribosomal subunit protein uS5: E
Small ribosomal subunit protein bS6, fully modified isoform: F
Small ribosomal subunit protein uS7: G
Small ribosomal subunit protein uS8: H
Small ribosomal subunit protein uS9: I
Small ribosomal subunit protein uS10: J
Small ribosomal subunit protein uS11: K
Small ribosomal subunit protein uS12: L
Small ribosomal subunit protein uS13: M
Small ribosomal subunit protein uS14: N
Small ribosomal subunit protein uS15: O
Small ribosomal subunit protein bS16: P
Small ribosomal subunit protein uS17: Q
Small ribosomal subunit protein bS18: R
Small ribosomal subunit protein uS19: S
Small ribosomal subunit protein bS20: T
Small ribosomal subunit protein bS21: U
Large ribosomal subunit protein bL33: W
Large ribosomal subunit protein bL34: X
Large ribosomal subunit protein bL35: Y
Large ribosomal subunit protein bL36: Z
Large ribosomal subunit protein uL11: 0
Large ribosomal subunit protein uL2: 3
Large ribosomal subunit protein uL3: 4
Large ribosomal subunit protein uL4: 5
Large ribosomal subunit protein uL5: 6
Large ribosomal subunit protein uL6: 7
Large ribosomal subunit protein bL9: 8
Large ribosomal subunit protein uL13: 9
Large ribosomal subunit protein uL14: a
Large ribosomal subunit protein uL15: b
Large ribosomal subunit protein uL16: c
Large ribosomal subunit protein bL17: d
Large ribosomal subunit protein uL18: e
Large ribosomal subunit protein bL19: f
Large ribosomal subunit protein bL20: g
Large ribosomal subunit protein bL21: h
Large ribosomal subunit protein uL22: i
Large ribosomal subunit protein uL23: j
Large ribosomal subunit protein uL24: k
Large ribosomal subunit protein bL25: l
Large ribosomal subunit protein bL27: m
Large ribosomal subunit protein bL28: n
Large ribosomal subunit protein uL29: o
Large ribosomal subunit protein uL30: p
Large ribosomal subunit protein bL32: q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

W
0

X
1

Y
2

Z
3

0
5

3
c

4
d

5
e

6
f

7
g

8
h

9
i

a
j

b
k

c
l

d
m

e
n

f
o

g
p

h
q

i
r

j
s

k
t

l
u

m
v

n
w

o
x

p
y

q
z

Small ribosomal subunit protein uS2

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

Small ribosomal subunit protein bS6, fully modified isoform

Small ribosomal subunit protein uS7

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS9

Small ribosomal subunit protein uS10

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS15

Small ribosomal subunit protein bS16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

Small ribosomal subunit protein uS19

Small ribosomal subunit protein bS20

Small ribosomal subunit protein bS21

Large ribosomal subunit protein bL33

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

Large ribosomal subunit protein bL36

Large ribosomal subunit protein uL11

Large ribosomal subunit protein uL2

Large ribosomal subunit protein uL3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein bL9

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL14

Large ribosomal subunit protein uL15

Large ribosomal subunit protein uL16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

Large ribosomal subunit protein bL25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

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