P11473 | SWISS-MODEL Repository

P11473 (VDR_HUMAN) Homo sapiens (Human)

Vitamin D3 receptor UniProtKB InterPro Interactive Modelling

427 aa; Sequence (Fasta) ; (Isoform 2); 3 identical sequences: Homo sapiens: F1D8P8; Pan troglodytes: A0A2J8LQJ2; Pan paniscus: A0A2R9BF25

It is possible new templates exist for this target since these models were created.

Available Structures

52 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound …	1ynw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P19793;	18-113	4×ZN;
Assess
Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element	1kb6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	21-121	4×ZN;
Assess
Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair…	1kb4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	22-120	4×ZN;
Assess
Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response Element	1kb2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	22-110	4×ZN;
Assess
Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to MC1288	1ie9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×VDX;
Assess
Crystal structure of the human VDR ligand binding domain bound to the synthetic agonist compound 2a…	3a40 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×23R; 2×SO4;
Assess
High resolution structure of human VDR ligand binding domain in complex with calcitriol	7qpp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-424	1×VDX; 1×SO4;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 24,24-F2-25(…	8iqn SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×SRF;
Assess
Synthesis, Structure, and Biological Activity of des-Side Chain Analogues of 1alpha,25-Dihydroxyvit…	3p8x SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×ZYD; 2×SO4;
Assess
Crystal structure of the human VDR ligand binding domain bound to the synthetic agonist compound 2a…	3a3z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×2MV; 2×SO4;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with (23R)-F-25(O…	8iqt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×SV0;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2S,3R,5Z…	5gt4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×2KB;
Assess
Crystal structure of the human VDR ligand binding domain bound to the natural metabolite 1alpha,25-…	3a78 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×3EV; 2×SO4;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 7,8-cis-1a,2…	3x36 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×41W;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2S,3R)-5…	5yt2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×90O;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2R,3R)-5…	5ysy SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×90L;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 7,8-cis-14-e…	3x31 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×41V;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene ty…	3aur SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×CA9;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 4-MP	3vhw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×VHW;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1alpha,25-Di…	4ite SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×TEY;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 15alpha-meth…	3ax8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×EIM;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene ty…	3auq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×CA9;
Assess
Crystal structure of the human vitamin D receptor (H305F/H397F) ligand binding domain complexed wit…	3a2j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×TEJ;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1alpha,25-Di…	4itf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×TFY;
Assess
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1-((((1S,2R,…	3wwr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×3AJ;
Assess
Crystal structure of the human vitamin D receptor (H305F) ligand binding domain complexed with TEI-…	3a2i SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	118-423	1×TEJ;
Assess
Design, Chemical synthesis, Functional characterization and Crystal structure of the sidechain anal…	3ogt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×FMV; 2×SO4;
Assess
Design, Synthesis, Evaluation and Structure of Vitamin D Analogues with Furan Side Chains	3tkc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×FMV; 2×SO4;
Assess
Structure-based design of a superagonist ligand for the vitamin D nuclear receptor	3cs6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×0CO;
Assess
Crystal structure of VDR LBD in complex with 2alpha(3-hydroxy-1-propyl) calcitriol	2hb7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×O1C;
Assess
Crystal structure of VDR LBD complexed to 2alpha-propyl-calcitriol	2ham SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×C33;
Assess
Crystal structure of VDR LBD in complex with 2 alpha-(3-hydroxy-1-propoxy) calcitriol	2har SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×OCC;
Assess
Crystal structure of VDR LBD in complex with 2alpha-(1-propoxy) calcitriol	2has SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×C3O;
Assess
Crystal structure of VDR LBD in complex with 2alpha-methyl calcitriol	2hb8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×MVD;
Assess
Structure-based design of a superagonist ligand for the vitamin D nuclear receptor	3cs4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	119-423	1×COV;
Assess
Human VDR ligand binding domain in complex with maxacalcitol	3b0t SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×MCZ; 1×SO4;
Assess
Crystal Structure Analysis of Vitamin D receptor	3az3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×DS6;
Assess
Crystal Structure Analysis of Vitamin D receptor	3az1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×DS2;
Assess
Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to KH1060	1ie8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×KH1;
Assess
Crystal Structure Analysis of Vitamin D receptor	3az2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×DS3;
Assess
CRYSTAL STRUCTURE OF THE NUCLEAR RECEPTOR FOR VITAMIN D COMPLEXED TO VITAMIN D	1db1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×VDX;
Assess
Crystal Structure Analysis of Vitamin D receptor	3w0a SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×DS5;
Assess
Crystal structure of VDR H305Q mutant	3m7r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×VDX;
Assess
Structural basis for the accommodation of bis- and tris-aromatic derivatives in Vitamin D Nuclear R…	4g2i SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×0VQ;
Assess
Crystal structure of a novel vitamin D3 analogue, ZK203278 showing dissociated profile	3kpz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×ZNE;
Assess
Crystal Structure Analysis of Vitamin D receptor	3w0c SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×6DS;
Assess
Crystal structure of the vdr ligand binding domain complexed to TX522	1txi SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×TX5;
Assess
Crystal Structure Analysis of Vitamin D receptor	3w0y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×DS4;
Assess
Crystal Structure Analysis of Vitamin D receptor	3wgp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×ED9;
Assess
Crystal structure of VDR ligand binding domain complexed to calcipotriol.	1s19 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×MC9;
Assess
Crystal structure of the VDR LBD complexed to seocalcitol.	1s0z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	120-423	1×EB1;
Assess
Crystal structure of human vitamin D receptor ligand binding domain in complex with a VDRM	5v39 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	122-423	1×8VM;
Assess

6 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
4nqa.1.B	monomer	0.60	19-423	1×ZN;	30.77
Assess
4nqa.2.B	monomer	0.59	19-424	2×ZN;	30.77
Assess
8f5y.1.A	monomer	0.58	124-423		38.54
Assess
3dzy.1.B	monomer	0.56	21-424	1×ZN;	27.37
Assess
7prv.1.A	monomer	0.53	20-425	2×ZN;	20.18
Assess
7prv.1.B	monomer	0.52	21-425	2×ZN;	20.18
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

9 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	4nqa.1.B	monomer	0.59	70-473	1×ZN;	30.85
Assess
Isoform 2	4nqa.2.B	monomer	0.59	70-474	2×ZN;	30.85
Assess
Isoform 2	4xhd.1.A	monomer	0.58	174-473		38.54
Assess
Isoform 2	5uan.1.A	monomer	0.56	72-474	2×ZN;	23.10
Assess
Isoform 2	3dzy.1.B	monomer	0.56	71-474	1×ZN;	27.45
Assess
Isoform 2	4nqa.1.A	monomer	0.56	68-473	2×ZN;	23.10
Assess
Isoform 2	3dzu.1.A	monomer	0.55	71-472	2×ZN;	23.17
Assess
Isoform 2	7prv.1.A	monomer	0.52	70-476	2×ZN;	20.23
Assess
Isoform 2	7prv.1.B	monomer	0.52	71-476	2×ZN;	20.23
Assess

P11473 (VDR_HUMAN) Homo sapiens (Human)

Vitamin D3 receptor UniProtKBInterProInteractive Modelling

Available Structures

52 Experimental Structures

6 SWISS-MODEL models

9 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Vitamin D3 receptor UniProtKB InterPro Interactive Modelling