SMTL ID : 1dva.2 (1 other biounit)

Crystal Structure of the Complex Between the Peptide Exosite Inhibitor E-76 and Coagulation Factor VIIA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0Z6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide(Covalent)

0Z6.1: 17 residues within 4Å: Chain A: H.41, G.85, T.86, T.87, D.186, S.187, C.188, K.189, G.190, D.191, S.192, V.210, S.211, W.212, G.213, Q.214, G.215 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.87, A:V.210, A:W.212, A:Q.214 Hydrogen bonds: A:S.187, A:S.187, A:G.190, A:D.191, A:S.192, A:S.211, A:G.213, A:G.213, A:G.215, A:G.215 Salt bridges: A:D.186

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.58, D.60, E.63, D.65, E.68 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.58, A:D.60, A:E.63, A:D.65, A:E.68 CA.6: 5 residues within 4Å: Chain B: D.5, G.6, Q.8, D.22, Q.23 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:G.6, B:D.22, B:D.22, B:Q.23

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.3: 7 residues within 4Å: Chain A: C.158, S.162, I.171, C.177, Q.214, H.221, F.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.214, A:F.222

1 x GLC: alpha-D-glucopyranose(Post Translational Modification)

GLC.4: 3 residues within 4Å: Chain B: Q.8, S.11, Y.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.11

1 x FUL: beta-L-fucopyranose(Post Translational Modification)

FUL.5: 1 residues within 4Å: Chain B: S.19 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dennis, M.S. et al., Peptide exosite inhibitors of factor VIIa as anticoagulants. Nature (2000)

Release Date

2000-05-12

Peptides

DES-GLA FACTOR VIIA (HEAVY CHAIN): A
DES-GLA FACTOR VIIA (LIGHT CHAIN): B
PEPTIDE E-76: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
M

C
Y

DES-GLA FACTOR VIIA (HEAVY CHAIN)

DES-GLA FACTOR VIIA (LIGHT CHAIN)

PEPTIDE E-76

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