SMTL ID : 4x8s.1

FACTOR VIIA IN COMPLEX WITH THE INHIBITOR 4-BROMO-2-METHOXYPHENOL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-oligomer

Ligands

1 x 3Z7: 4-bromo-2-methoxyphenol(Non-covalent)

3Z7.1: 15 residues within 4Å: Chain A: H.41, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223, V.224, Y.225 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.210 Hydrogen bonds: A:K.189, A:G.213 Water bridges: A:G.213

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.1, H2O.2

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.70, R.71, R.72, H.97, Q.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98 Salt bridges: A:R.72, A:H.97 SO4.4: 7 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 Ligands: GOL.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.21, A:K.45, A:K.47, A:N.48 SO4.5: 5 residues within 4Å: Chain A: S.162, I.171, H.221, F.222, V.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.162, A:F.222 Salt bridges: A:H.221 SO4.6: 6 residues within 4Å: Chain A: I.31, N.32, L.111, Q.236, M.239 Chain B: H.26 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:I.31, A:N.32, A:Q.236 Water bridges: B:E.27 Salt bridges: B:H.26

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: F.43, D.44, W.49, I.78, P.84, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.43 GOL.8: 6 residues within 4Å: Chain A: C.7, E.11, C.12, L.128, W.204 Chain B: I.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.11 Water bridges: A:W.14 GOL.9: 5 residues within 4Å: Chain A: V.20, L.25, K.45, I.46 Ligands: SO4.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheney, D.L. et al., Discovery of Novel P1 Groups for Coagulation Factor VIIa Inhibition Using Fragment-Based Screening. J.Med.Chem. (2015)

Release Date

2015-03-25

Peptides

Factor VIIa (Heavy Chain): A
Factor VIIa (Light Chain): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Factor VIIa (Heavy Chain)

Factor VIIa (Light Chain)

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