SMTL ID : 4jyv.1

Structure of factor VIIA in complex with the inhibitor (2R)-2-[3-ETHOXY-4-(PROPAN-2-YLOXY)PHENYL]-2-(ISOQUINOLIN-6-YLAMINO)-N-[(3-SULFAMOYLPHENYL)SULFONYL]ETHANAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 1OJ: (2R)-2-[3-ethoxy-4-(propan-2-yloxy)phenyl]-2-(isoquinolin-6-ylamino)-N-[(3-sulfamoylphenyl)sulfonyl]ethanamide(Non-covalent)

1OJ.1: 19 residues within 4Å: Chain A: H.41, D.44, G.85, T.86, T.87, D.90, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, G.215, G.223 Ligands: GOL.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.210, A:W.212, A:W.212 Hydrogen bonds: A:G.85, A:S.192, A:S.192

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.1, H2O.5

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.71, R.72, H.97, Q.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98, A:Q.98 Salt bridges: A:H.97 SO4.4: 6 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.21, A:K.47, A:N.48 SO4.5: 7 residues within 4Å: Chain A: C.158, S.162, I.171, C.177, H.221, F.222, V.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.162, A:Q.214, A:F.222, A:F.222 Salt bridges: A:H.221 SO4.6: 6 residues within 4Å: Chain A: I.31, N.32, L.111, Q.236, M.239 Chain B: H.26 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:I.31, A:N.32, A:Q.236 Water bridges: B:H.26 Salt bridges: B:H.26

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 8 residues within 4Å: Chain A: L.25, C.26, H.41, C.42, K.189, S.192 Ligands: 1OJ.1, GOL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.25, A:S.192, A:S.192 Water bridges: A:H.41 GOL.8: 5 residues within 4Å: Chain A: F.43, D.44, W.49, P.84, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.43 GOL.9: 5 residues within 4Å: Chain A: E.11, C.12, L.128, W.204 Chain B: I.49 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.11, A:E.11, A:E.11 Water bridges: A:W.204 GOL.10: 6 residues within 4Å: Chain A: Q.24, L.25, Q.134, T.141, G.190 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.25 Water bridges: A:Q.24, A:T.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glunz, P.W. et al., Nonbenzamidine acylsulfonamide tissue factor-factor VIIa inhibitors. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-07-24

Peptides

Factor VII light chain: A
Factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Factor VII light chain

Factor VII heavy chain

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