SMTL ID : 5pav.1

Crystal Structure of Factor VIIa in complex with N-(6-aminopyridin-3-yl)-5-hydroxy-1-phenylpyrazole-4-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: C.3, C.14, S.15, D.16 Chain B: R.119 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:C.14, A:D.16 Salt bridges: B:R.119 SO4.8: 3 residues within 4Å: Chain B: M.154, T.155, R.227 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.155 Water bridges: B:R.152, B:Q.156, B:R.227 Salt bridges: B:R.227

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.48, K.49, I.50, E.54 Chain B: H.199, G.202, T.203, W.204 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.50, A:I.50, A:E.54 Water bridges: A:K.49, A:K.49 GOL.3: 4 residues within 4Å: Chain A: R.25, C.26, S.31, L.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.26, A:C.26, A:L.32, A:L.32 GOL.9: 5 residues within 4Å: Chain B: F.43, W.49, I.78, P.84, L.248 2 PLIP interactions: 2 interactions with chain B Water bridges: B:F.43, B:D.44 GOL.10: 5 residues within 4Å: Chain A: Y.45 Chain B: D.67, T.103, D.104, H.105 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.104, B:H.105, B:H.105, A:Y.45 Water bridges: B:D.67, B:D.67, B:T.103, A:Y.45 GOL.11: 4 residues within 4Å: Chain B: Q.24, L.61, T.141, L.143 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.141 Water bridges: B:Q.24, B:T.141

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.68, H2O.6, H2O.11

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain B: E.242 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: R.50, G.246, V.247 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: R.71, R.72, H.97, Q.98 Ligand excluded by PLIP

1 x 7ZM: N-(6-aminopyridin-3-yl)-5-hydroxy-1-phenylpyrazole-4-carboxamide(Non-covalent)

7ZM.12: 14 residues within 4Å: Chain B: L.25, C.26, H.41, C.42, K.45, D.186, S.187, C.188, K.189, S.192, V.210, W.212, G.213, G.215 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:K.189, B:V.210 Hydrogen bonds: B:S.187, B:S.192, B:S.192 Water bridges: B:K.189, B:K.189, B:G.190, B:W.212, B:G.213 pi-Stacking: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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