SMTL ID : 2ec9.1

Crystal structure analysis of human Factor VIIa , Souluble tissue factor complexed with BCX-3607

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ASO: 1,5-anhydro-D-glucitol(Non-covalent)

ASO.1: 4 residues within 4Å: Chain A: Q.49, S.52, P.54, Y.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.52 Water bridges: A:P.54, A:N.80

1 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.2: 6 residues within 4Å: Chain A: G.58, S.60, F.71, C.72, L.73 Chain D: R.41 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:L.73 Hydrogen bonds: A:S.60, D:R.41, D:R.41

9 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.46, G.47, Q.49, D.63, Q.64 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.46, A:G.47, A:D.63, A:Q.64 CA.4: 2 residues within 4Å: Chain A: E.7, E.26 No protein-ligand interaction detected (PLIP) CA.5: 4 residues within 4Å: Chain A: E.6, E.7, R.9, E.16 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:R.9 CA.6: 3 residues within 4Å: Chain A: N.2, E.16, E.26 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain A: E.6 No protein-ligand interaction detected (PLIP) CA.8: 2 residues within 4Å: Chain A: E.14, E.19 No protein-ligand interaction detected (PLIP) CA.9: 3 residues within 4Å: Chain A: R.15, E.19, E.20 No protein-ligand interaction detected (PLIP) CA.10: 2 residues within 4Å: Chain A: E.25, E.29 No protein-ligand interaction detected (PLIP) CA.11: 5 residues within 4Å: Chain B: E.58, D.60, E.63, H.64, E.68 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.58, B:E.58, B:E.63, B:H.64

1 x 24X: 2'-((5-CARBAMIMIDOYLPYRIDIN-2-YLAMINO)METHYL)-4-(ISOBUTYLCARBAMOYL)-4'-VINYLBIPHENYL-2-CARBOXYLIC ACID(Non-covalent)

24X.12: 18 residues within 4Å: Chain B: H.41, T.86, T.87, D.90, Q.134, T.141, D.186, S.187, K.189, G.190, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:H.41, B:T.87, B:Q.134, B:T.141, B:K.189, B:K.189, B:V.210, B:W.212 Hydrogen bonds: B:D.186, B:S.187, B:G.190, B:S.192, B:S.192, B:G.215 Salt bridges: B:H.41 pi-Stacking: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krishnan, R. et al., Probing the S2 site of factor VIIa to generate potent and selective inhibitors: the structure of BCX-3607 in complex with tissue factor-factor VIIa. Acta Crystallogr.,Sect.D (2007)

Release Date

2008-02-19

Peptides

Coagulation factor VII: A
Coagulation factor VII: B
Tissue factor: C
Tissue factor: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
T

D
U

Coagulation factor VII

Coagulation factor VII

Tissue factor

Tissue factor

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