SMTL ID : 5i46.1

Factor VIIA in complex with the inhibitor (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-hydroxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.1~6,10~]henicosa-1(18),6(21),7,9,16,19-hexaene-3,12-dione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 67O: (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-8-fluoro-7-hydroxy-4,15,17-trimethyl-13-oxa-4,11-diazatricyclo[14.2.2.1~6,10~]henicosa-1(18),6(21),7,9,16,19-hexaene-3,12-dione(Non-covalent)

67O.1: 22 residues within 4Å: Chain A: H.41, D.44, K.45, G.85, T.86, T.87, D.90, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223 Ligands: MES.6 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:D.44, A:T.87, A:V.210, A:W.212 Hydrogen bonds: A:K.45, A:D.186, A:S.187, A:S.192, A:S.192 Water bridges: A:D.44, A:G.85, A:W.212 pi-Stacking: A:H.41 pi-Cation interactions: A:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.2, H2O.6

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.71, R.72, H.97, Q.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98 Salt bridges: A:R.72, A:H.97 SO4.4: 7 residues within 4Å: Chain A: C.158, S.162, I.171, Q.214, H.221, F.222, V.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.162, A:F.222 Water bridges: A:S.168, A:H.221 Salt bridges: A:H.221 SO4.5: 5 residues within 4Å: Chain A: I.31, N.32, Q.236, M.239 Chain B: H.26 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.32, A:Q.236 Water bridges: B:H.26, B:H.26 Salt bridges: B:H.26

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 11 residues within 4Å: Chain A: Q.24, L.25, C.26, H.41, C.42, Q.134, T.141, K.189, G.190, S.192 Ligands: 67O.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.25, A:Q.134 Water bridges: A:Q.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glunz, P.W. et al., Atropisomer Control in Macrocyclic Factor VIIa Inhibitors. J.Med.Chem. (2016)

Release Date

2016-06-22

Peptides

Coagulation factor VII (Heavy Chain): A
Coagulation factor VII (Light Chain): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Coagulation factor VII (Heavy Chain)

Coagulation factor VII (Light Chain)

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