SMTL ID : 5paw.1

Crystal Structure of Factor VIIa in complex with isoquinoline-1,6-diamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: T.42, V.43 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain B: R.50, V.247 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: E.242 Ligand excluded by PLIP

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.63, B:E.68, H2O.6

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain B: H.41, K.189, G.190, S.192 Ligands: 7XM.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.190, B:S.192, B:S.192 Salt bridges: B:H.41 SO4.6: 3 residues within 4Å: Chain B: M.154, T.155, R.227 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.155, B:T.155 Water bridges: B:R.227, B:R.227 Salt bridges: B:R.227

1 x 7XM: isoquinoline-1,6-diamine(Non-covalent)

7XM.7: 13 residues within 4Å: Chain B: D.186, S.187, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223, V.224 Ligands: SO4.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.210 Hydrogen bonds: B:D.186, B:S.192, B:V.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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