SMTL ID : 1w2k.1

tf7a_4380 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 380: (2R)-2-({4-[AMINO(IMINO)METHYL]PHENYL}AMINO)-N-BENZYL-2-(3,4-DIMETHOXYPHENYL)ACETAMIDE(Non-covalent)

380.1: 16 residues within 4Å: Chain A: H.41, D.44, T.86, T.87, D.90, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, G.215 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.41, A:V.210, A:W.212 Hydrogen bonds: A:H.41, A:D.186, A:D.186, A:S.187, A:S.192 Water bridges: A:S.192, A:W.212, A:Q.214 pi-Cation interactions: A:K.45

9 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.58, D.60, L.61, E.63, E.68 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.2 CA.5: 6 residues within 4Å: Chain B: D.46, G.47, D.48, Q.49, D.63, Q.64 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.46, B:G.47, B:D.63, B:D.63, B:Q.64 CA.6: 5 residues within 4Å: Chain B: E.7, E.25, E.26, E.29 Ligands: CA.7 No protein-ligand interaction detected (PLIP) CA.7: 6 residues within 4Å: Chain B: E.7, E.16, E.26, E.29 Ligands: CA.6, CA.8 No protein-ligand interaction detected (PLIP) CA.8: 8 residues within 4Å: Chain B: A.1, N.2, E.6, E.7, E.16, E.26 Ligands: CA.7, CA.9 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:A.1 CA.9: 5 residues within 4Å: Chain B: A.1, E.6, E.16, E.20 Ligands: CA.8 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:A.1, H2O.7 CA.10: 2 residues within 4Å: Chain B: E.14, E.19 No protein-ligand interaction detected (PLIP) CA.11: 1 residues within 4Å: Chain B: E.20 No protein-ligand interaction detected (PLIP) CA.12: 2 residues within 4Å: Chain B: E.25, E.29 No protein-ligand interaction detected (PLIP)

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.3: 6 residues within 4Å: Chain A: S.162, I.171, W.212, H.221, F.222, V.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.162, A:H.221, A:F.222

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.4: 6 residues within 4Å: Chain B: G.58, S.60, F.71, C.72, L.73 Chain C: F.140 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:L.73, C:F.140

1 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.13: 4 residues within 4Å: Chain B: Q.49, S.52, P.54, Y.68 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Groebke-Zbinden, K. et al., Design of Selective Phenylglycine Amide Tissue Factor/Factor Viia Inhibitors. Bioorg.Med.Chem.Lett. (2005)

Release Date

2005-06-20

Peptides

BLOOD COAGULATION FACTOR VIIA: A
BLOOD COAGULATION FACTOR VIIA: B
TISSUE FACTOR: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
T

BLOOD COAGULATION FACTOR VIIA

BLOOD COAGULATION FACTOR VIIA

TISSUE FACTOR

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