SMTL ID : 1qfk.1

STRUCTURE OF HUMAN FACTOR VIIA AND ITS IMPLICATIONS FOR THE TRIGGERING OF BLOOD COAGULATION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-FUL.1: 4 residues within 4Å: Chain B: D.167, S.168, P.169, N.170 No protein-ligand interaction detected (PLIP)

1 x GLC: alpha-D-glucopyranose(Post Translational Modification)

GLC.2: 3 residues within 4Å: Chain A: Q.1, S.4, P.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.4

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.3: 3 residues within 4Å: Chain A: G.10, S.12, L.25 No protein-ligand interaction detected (PLIP)

1 x 0Z6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide(Covalent)

0Z6.4: 22 residues within 4Å: Chain B: H.41, D.44, G.85, T.86, T.87, D.90, S.168, P.169, D.186, S.187, C.188, K.189, G.190, D.191, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:H.41, B:T.87, B:P.169, B:V.210, B:W.212 Hydrogen bonds: B:S.187, B:S.187, B:G.190, B:S.192, B:S.211, B:G.213, B:G.213, B:G.215, B:G.215 Water bridges: B:A.217 Salt bridges: B:D.186

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.63, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pike, A.C. et al., Structure of human factor VIIa and its implications for the triggering of blood coagulation. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-08-01

Peptides

COAGULATION FACTOR VIIA LIGHT CHAIN: A
COAGULATION FACTOR VIIA HEAVY CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

COAGULATION FACTOR VIIA LIGHT CHAIN

COAGULATION FACTOR VIIA HEAVY CHAIN

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