SMTL ID : 5pb5.1

human factor VIIa in complex with 1-[[3-[5-hydroxy-4-(7H-pyrrolo[2,3-d]pyrimidin-6-yl)pyrazol-1-yl]phenyl]methyl]-3-phenylurea at 1.84A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.25, C.26, Y.30, S.31, L.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.26, A:Y.30, A:L.32, A:L.32

1 x 9RY: N-({3-[5-hydroxy-4-(7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1H-pyrazol-1-yl]phenyl}methyl)-N'-phenylurea(Non-covalent)

9RY.2: 14 residues within 4Å: Chain B: L.25, C.26, H.41, C.42, D.44, K.45, G.85, S.187, C.188, K.189, S.192, S.211, W.212, G.215 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.25, B:K.189, B:K.189, B:W.212, B:W.212 Hydrogen bonds: B:H.41, B:D.44, B:D.44, B:S.192, B:S.192 Water bridges: B:G.190, B:S.192 pi-Stacking: B:H.41, B:W.212

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.68, H2O.5, H2O.9

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain B: R.50, G.246, V.247 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain B: M.154, T.155, R.227 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.155, B:T.155 Water bridges: B:R.152, B:R.227 Salt bridges: B:R.227 SO4.6: 3 residues within 4Å: Chain B: S.241, E.242, R.244 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.242, B:R.244 Water bridges: B:S.241, B:R.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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